Search Results - "Spronk, Christian A E M"

CING: an integrated residue-based structure validation program suite by Doreleijers, Jurgen F., Sousa da Silva, Alan W., Krieger, Elmar, Nabuurs, Sander B., Spronk, Christian A. E. M., Stevens, Tim J., Vranken, Wim F., Vriend, Gert, Vuister, Geerten W.

“…We present a suite of programs, named CING for Common Interface for NMR Structure Generation that provides for a residue-based, integrated validation of the…”
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Extension of the Binding Motif of the Sin3 Interacting Domain of the Mad Family Proteins by van Ingen, Hugo, Lasonder, Edwin, Jansen, Jacobus F. A, Kaan, Anita M, Spronk, Christian A. E. M, Stunnenberg, Henk G, Vuister, Geerten W

“…Sin3 forms the scaffold for a multiprotein corepressor complex that silences transcription via the action of histone deacetylases. Sin3 is recruited to the DNA…”
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The Mad1-Sin3B interaction involves a novel helical fold by Vuister, Geerten W, Spronk, Christian A. E. M, Tessari, Marco, Kaan, Anita M, Jansen, Jacobus F. A, Vermeulen, Michiel, Stunnenberg, Hendrik G

“…Sin3A or Sin3B are components of a corepressor complex that mediates repression by transcription factors such as the helix-loop-helix proteins Mad and Mxi…”
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Hinge-helix formation and DNA bending in various lac repressor-operator complexes by Spronk, Christian A. E. M., Folkers, Gert E., Noordman, Anne-Marie G. W., Wechselberger, Rainer, van den Brink, Nienke, Boelens, Rolf, Kaptein, Robert

“…The hinge‐region of the lac repressor plays an important role in the models for induction and DNA looping in the lac operon. When lac repressor is bound to a…”
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Refinement of protein structures in explicit solvent by Linge, Jens P., Williams, Mark A., Spronk, Christian A.E.M., Bonvin, Alexandre M. J. J., Nilges, Michael

“…We present a CPU efficient protocol for refinement of protein structures in a thin layer of explicit solvent and energy parameters with completely revised…”
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DRESS: a database of REfined solution NMR structures by Nabuurs, Sander B., Nederveen, Aart J., Vranken, Wim, Doreleijers, Jurgen F., Bonvin, Alexandre M.J.J., Vuister, Geerten W., Vriend, Gert, Spronk, Christian A.E.M.

“…Several studies have shown that biomolecular NMR structures are often of lower quality when compared to crystal structures, and consequently they are often…”
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Binding of the AVR4 elicitor of Cladosporium fulvum to chitotriose units is facilitated by positive allosteric protein-protein interactions: the chitin-binding site of AVR4 represents a novel binding site on the folding scaffold shared between the invertebrate and the plant chitin-binding domain by van den Burg, Harrold A, Spronk, Christian A E M, Boeren, Sjef, Kennedy, Matthew A, Vissers, Johannes P C, Vuister, Geerten W, de Wit, Pierre J G M, Vervoort, Jacques

“…The attack of fungal cell walls by plant chitinases is an important plant defense response to fungal infection. Anti-fungal activity of plant chitinases is…”
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The solution structure and DNA-binding properties of the cold-shock domain of the human Y-box protein YB-1 by Kloks, Cathelijne P.A.M., Spronk, Christian A.E.M., Lasonder, Edwin, Hoffmann, Astrid, Vuister, Geerten W., Grzesiek, Stephan, Hilbers, Cornelis W.

“…The human Y-box protein 1 (YB-1) is a member of the Y-box protein family, a class of proteins involved in transcriptional and translational regulation of a…”
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Improving the quality of protein structures derived by NMR spectroscopy by Spronk, Christian A E M, Linge, Jens P, Hilbers, Cornelis W, Vuister, Geerten W

“…Biomolecular structures provide the basis for many studies in several research areas such as homology modelling, structure-based drug design and functional…”
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Structure, dynamics and binding characteristics of the second PDZ domain of PTP-BL by Walma, Tine, Spronk, Christian A.E.M, Tessari, Marco, Aelen, Jan, Schepens, Jan, Hendriks, Wiljan, Vuister, Geerten W

“…The PDZ domains of the protein tyrosine phosphatase PTP-BL mediate interactions by binding to specific amino acid sequences in target proteins. The solution…”
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Binding of the AVR4 Elicitor of Cladosporium fulvum to Chitotriose Units Is Facilitated by Positive Allosteric Protein-Protein Interactions by van den Burg, Harrold A., Spronk, Christian A.E.M., Boeren, Sjef, Kennedy, Matthew A., Vissers, Johannes P.C., Vuister, Geerten W., de Wit, Pierre J.G.M., Vervoort, Jacques

“…The attack of fungal cell walls by plant chitinases is an important plant defense response to fungal infection. Anti-fungal activity of plant chitinases is…”
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