Search Results - "Sperschneider, Jana"

EffectorP 3.0: Prediction of Apoplastic and Cytoplasmic Effectors in Fungi and Oomycetes by Sperschneider, Jana, Dodds, Peter N

“…Many fungi and oomycete species are devasting plant pathogens. These eukaryotic filamentous pathogens secrete effector proteins to facilitate plant infection…”
Get full text

ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning by Sperschneider, Jana, Dodds, Peter N., Singh, Karam B., Taylor, Jennifer M.

“…The plant apoplast is integral to intercellular signalling, transport and plant–pathogen interactions. Plant pathogens deliver effectors both into the apoplast…”
Get full text

EffectorP: predicting fungal effector proteins from secretomes using machine learning by Sperschneider, Jana, Gardiner, Donald M, Dodds, Peter N, Tini, Francesco, Covarelli, Lorenzo, Singh, Karam B, Manners, John M, Taylor, Jennifer M

“…Eukaryotic filamentous plant pathogens secrete effector proteins that modulate the host cell to facilitate infection. Computational effector candidate…”
Get full text

LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell by Sperschneider, Jana, Catanzariti, Ann-Maree, DeBoer, Kathleen, Petre, Benjamin, Gardiner, Donald M., Singh, Karam B., Dodds, Peter N., Taylor, Jennifer M.

“…Pathogens secrete effector proteins and many operate inside plant cells to enable infection. Some effectors have been found to enter subcellular compartments…”
Get full text

Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation by Li, Feng, Upadhyaya, Narayana M., Sperschneider, Jana, Matny, Oadi, Nguyen-Phuc, Hoa, Mago, Rohit, Raley, Castle, Miller, Marisa E., Silverstein, Kevin A. T., Henningsen, Eva, Hirsch, Cory D., Visser, Botma, Pretorius, Zacharias A., Steffenson, Brian J., Schwessinger, Benjamin, Dodds, Peter N., Figueroa, Melania

“…Parasexuality contributes to diversity and adaptive evolution of haploid (monokaryotic) fungi. However, non-sexual genetic exchange mechanisms are not defined…”
Get full text

DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model by Sperschneider, Jana, Datta, Amitava

“…RNA pseudoknots are functional structure elements with key roles in viral and cellular processes. Prediction of a pseudoknotted minimum free energy structure…”
Get full text

Loss of AvrSr50 by somatic exchange in stem rust leads to virulence for Sr50 resistance in wheat by Chen, Jiapeng, Upadhyaya, Narayana M., Ortiz, Diana, Sperschneider, Jana, Li, Feng, Bouton, Clement, Breen, Susan, Dong, Chongmei, Xu, Bo, Zhang, Xiaoxiao, Mago, Rohit, Newell, Kim, Xia, Xiaodi, Bernoux, Maud, Taylor, Jennifer M., Steffenson, Brian, Jin, Yue, Zhang, Peng, Kanyuka, Kostya, Figueroa, Melania, Ellis, Jeffrey G., Park, Robert F., Dodds, Peter N.

“…Race-specific resistance genes protect the global wheat crop from stem rust disease caused by Puccinia graminis f. sp. tritici (Pgt) but are often overcome…”
Get full text

Advances and challenges in computational prediction of effectors from plant pathogenic fungi by Sperschneider, Jana, Dodds, Peter N, Gardiner, Donald M, Manners, John M, Singh, Karam B, Taylor, Jennifer M

“…  Apoplastic effectors, in particular, often contain several disulfide bonds [17] and predicted secretomes of pathogenic fungi contain proteins with elevated…”
Get full text

Genome sequencing and comparative genomics of the broad host-range pathogen Rhizoctonia solani AG8 by Hane, James K, Anderson, Jonathan P, Williams, Angela H, Sperschneider, Jana, Singh, Karam B

“…Rhizoctonia solani is a soil-borne basidiomycete fungus with a necrotrophic lifestyle which is classified into fourteen reproductively incompatible anastomosis…”
Get full text

Physical separation of haplotypes in dikaryons allows benchmarking of phasing accuracy in Nanopore and HiFi assemblies with Hi-C data by Duan, Hongyu, Jones, Ashley W, Hewitt, Tim, Mackenzie, Amy, Hu, Yiheng, Sharp, Anna, Lewis, David, Mago, Rohit, Upadhyaya, Narayana M, Rathjen, John P, Stone, Eric A, Schwessinger, Benjamin, Figueroa, Melania, Dodds, Peter N, Periyannan, Sambasivam, Sperschneider, Jana

“…Most animals and plants have more than one set of chromosomes and package these haplotypes into a single nucleus within each cell. In contrast, many fungal…”
Get full text

A functional genomics approach to dissect spotted alfalfa aphid resistance in Medicago truncatula by Jacques, Silke, Sperschneider, Jana, Garg, Gagan, Thatcher, Louise F., Gao, Ling-Ling, Kamphuis, Lars G., Singh, Karam B.

“…Aphids are virus-spreading insect pests affecting crops worldwide and their fast population build-up and insecticide resistance make them problematic to…”
Get full text

Genomics accelerated isolation of a new stem rust avirulence gene–wheat resistance gene pair by Upadhyaya, Narayana M., Mago, Rohit, Panwar, Vinay, Hewitt, Tim, Luo, Ming, Chen, Jian, Sperschneider, Jana, Nguyen-Phuc, Hoa, Wang, Aihua, Ortiz, Diana, Hac, Luch, Bhatt, Dhara, Li, Feng, Zhang, Jianping, Ayliffe, Michael, Figueroa, Melania, Kanyuka, Kostya, Ellis, Jeffrey G., Dodds, Peter N.

“…Stem rust caused by the fungus Puccinia graminis f. sp. tritici ( Pgt ) is a devastating disease of the global staple crop wheat. Although this disease was…”
Get full text

Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors by Williams, Angela H, Sharma, Mamta, Thatcher, Louise F, Azam, Sarwar, Hane, James K, Sperschneider, Jana, Kidd, Brendan N, Anderson, Jonathan P, Ghosh, Raju, Garg, Gagan, Lichtenzveig, Judith, Kistler, H Corby, Shea, Terrance, Young, Sarah, Buck, Sally-Anne G, Kamphuis, Lars G, Saxena, Rachit, Pande, Suresh, Ma, Li-Jun, Varshney, Rajeev K, Singh, Karam B

“…Soil-borne fungi of the Fusarium oxysporum species complex cause devastating wilt disease on many crops including legumes that supply human dietary protein…”
Get full text

An RNAi supplemented diet as a reverse genetics tool to control bluegreen aphid, a major pest of legumes by Jacques, Silke, Reidy-Crofts, Jenny, Sperschneider, Jana, Kamphuis, Lars G., Gao, Ling-Ling, Edwards, Owain R., Singh, Karam B.

“…Aphids are important agricultural pests causing major yield losses worldwide. Since aphids can rapidly develop resistance to chemical insecticides there is an…”
Get full text

Genome-Enabled Analysis of Population Dynamics and Virulence-Associated Loci in the Oat Crown Rust Fungus Puccinia coronata f. sp. avenae by Hewitt, Tim C, Henningsen, Eva C, Pereira, Danilo, McElroy, Kerensa, Nazareno, Eric S, Dugyala, Sheshanka, Nguyen-Phuc, Hoa, Li, Feng, Miller, Marisa E, Visser, Botma, Pretorius, Zacharias A, Boshoff, Willem H P, Sperschneider, Jana, Stukenbrock, Eva H, Kianian, Shahryar F, Dodds, Peter N, Figueroa, Melania

“…f. sp. ( ) is an important fungal pathogen causing crown rust that impacts oat production worldwide. Genetic resistance for crop protection against is often…”
Get full text

Flax rust infection transcriptomics reveals a transcriptional profile that may be indicative for rust Avr genes by Wu, Wenjie, Nemri, Adnane, Blackman, Leila M, Catanzariti, Ann-Maree, Sperschneider, Jana, Lawrence, Gregory J, Dodds, Peter N, Jones, David A, Hardham, Adrienne R

“…Secreted effectors of fungal pathogens are essential elements for disease development. However, lack of sequence conservation among identified effectors has…”
Get full text

Identification and profiling of narrow-leafed lupin (Lupinus angustifolius) microRNAs during seed development by DeBoer, Kathleen, Melser, Su, Sperschneider, Jana, Kamphuis, Lars G, Garg, Gagan, Gao, Ling-Ling, Frick, Karen, Singh, Karam B

“…Whilst information regarding small RNAs within agricultural crops is increasing, the miRNA composition of the nutritionally valuable pulse narrow-leafed lupin…”
Get full text

A highly contiguous genome assembly reveals sources of genomic novelty in the symbiotic fungus Rhizophagus irregularis by Manley, Bethan F, Lotharukpong, Jaruwatana S, Barrera-Redondo, Josué, Llewellyn, Theo, Yildirir, Gokalp, Sperschneider, Jana, Corradi, Nicolas, Paszkowski, Uta, Miska, Eric A, Dallaire, Alexandra

“…Abstract The root systems of most plant species are aided by the soil-foraging capacities of symbiotic arbuscular mycorrhizal (AM) fungi of the Glomeromycotina…”
Get full text

The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation by Sperschneider, Jana, Jones, Ashley W, Nasim, Jamila, Xu, Bo, Jacques, Silke, Zhong, Chengcheng, Upadhyaya, Narayana M, Mago, Rohit, Hu, Yiheng, Figueroa, Melania, Singh, Karam B, Stone, Eric A, Schwessinger, Benjamin, Wang, Ming-Bo, Taylor, Jennifer M, Dodds, Peter N

“…Silencing of transposable elements (TEs) is essential for maintaining genome stability. Plants use small RNAs (sRNAs) to direct DNA methylation to TEs…”
Get full text

Machine learning in plant–pathogen interactions: empowering biological predictions from field scale to genome scale by Sperschneider, Jana

“…Machine learning (ML) encompasses statistical methods that learn to identify patterns in complex datasets. Here, I review application areas in plant–pathogen…”
Get full text