Search Results - "Sorokin, Dimitry Y"

A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments by Vavourakis, Charlotte D, Andrei, Adrian-Stefan, Mehrshad, Maliheh, Ghai, Rohit, Sorokin, Dimitry Y, Muyzer, Gerard

“…Hypersaline soda lakes are characterized by extreme high soluble carbonate alkalinity. Despite the high pH and salt content, highly diverse microbial…”
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Diversity and Distribution of Sulfur Oxidation-Related Genes in Thioalkalivibrio , a Genus of Chemolithoautotrophic and Haloalkaliphilic Sulfur-Oxidizing Bacteria by Berben, Tom, Overmars, Lex, Sorokin, Dimitry Y, Muyzer, Gerard

“…Soda lakes are saline alkaline lakes characterized by high concentrations of sodium carbonate/bicarbonate which lead to a stable elevated pH (>9), and moderate…”
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Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake by Vavourakis, Charlotte D, Mehrshad, Maliheh, Balkema, Cherel, van Hall, Rutger, Andrei, Adrian-Ştefan, Ghai, Rohit, Sorokin, Dimitry Y, Muyzer, Gerard

“…The planetary sulfur cycle is a complex web of chemical reactions that can be microbial-mediated or can occur spontaneously in the environment, depending on…”
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The microbial sulfur cycle at extremely haloalkaline conditions of soda lakes by Sorokin, Dimitry Y, Kuenen, J Gijs, Muyzer, Gerard

“…Soda lakes represent a unique ecosystem with extremely high pH (up to 11) and salinity (up to saturation) due to the presence of high concentrations of sodium…”
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Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines by Vavourakis, Charlotte D, Ghai, Rohit, Rodriguez-Valera, Francisco, Sorokin, Dimitry Y, Tringe, Susannah G, Hugenholtz, Philip, Muyzer, Gerard

“…Soda lakes are salt lakes with a naturally alkaline pH due to evaporative concentration of sodium carbonates in the absence of major divalent cations…”
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Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi by Sorokin, Dimitry Y, Lücker, Sebastian, Vejmelkova, Dana, Kostrikina, Nadezhda A, Kleerebezem, Robbert, Rijpstra, W Irene C, Damsté, Jaap S Sinninghe, Le Paslier, Denis, Muyzer, Gerard, Wagner, Michael, van Loosdrecht, Mark C M, Daims, Holger

“…Nitrite-oxidizing bacteria (NOB) catalyze the second step of nitrification, a major process of the biogeochemical nitrogen cycle, but the recognized diversity…”
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Halo(natrono)archaea from hypersaline lakes can utilize sulfoxides other than DMSO as electron acceptors for anaerobic respiration by Sorokin, Dimitry Y., Roman, Pawel, Kolganova, Tatjana V.

“…Dimethylsulfoxide (DMSO) has long been known to support anaerobic respiration in a few species of basically aerobic extremely halophilic euryarchaea living in…”
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Symbiosis between nanohaloarchaeon and haloarchaeon is based on utilization of different polysaccharides by La Cono, Violetta, Messina, Enzo, Rohde, Manfred, Arcadi, Erika, Ciordia, Sergio, Crisafi, Francesca, Denaro, Renata, Ferrer, Manuel, Giuliano, Laura, Golyshin, Peter N., Golyshina, Olga V., Hallsworth, John E., La Spada, Gina, Mena, Maria C., Merkel, Alexander Y., Shevchenko, Margarita A., Smedile, Francesco, Sorokin, Dimitry Y., Toshchakov, Stepan V., Yakimov, Michail M.

“…Nano-sized archaeota, with their small genomes and limited metabolic capabilities, are known to associate with other microbes, thereby compensating for their…”
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Wenzhouxiangella Strain AB-CW3, a Proteolytic Bacterium From Hypersaline Soda Lakes That Preys on Cells of Gram-Positive Bacteria by Sorokin, Dimitry Y., Mosier, Damon, Zorz, Jackie K., Dong, Xiaoli, Strous, Marc

“…A new haloalkaliphilic species of Wenzhouxiangella , strain AB-CW3, was isolated from a system of hypersaline alkaline soda lakes in the Kulunda Steppe using…”
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Phenotypic and genomic characterization of the first alkaliphilic aceticlastic methanogens and proposal of a novel genus Methanocrinis gen.nov. within the family Methanotrichaceae by Khomyakova, Maria A., Merkel, Alexander Y., Slobodkin, Alexander I., Sorokin, Dimitry Y.

“…Highly purified cultures of alkaliphilic aceticlastic methanogens were collected for the first time using methanogenic enrichments with acetate from a soda…”
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Comparative Genome Analysis of Three Thiocyanate Oxidizing Thioalkalivibrio Species Isolated from Soda Lakes by Berben, Tom, Overmars, Lex, Sorokin, Dimitry Y, Muyzer, Gerard

“…Thiocyanate is a C1 compound containing carbon, nitrogen, and sulfur. It is a (by)product in a number of natural and industrial processes. Because thiocyanate…”
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Physiological and genomic features of highly alkaliphilic hydrogen-utilizing Betaproteobacteria from a continental serpentinizing site by Suzuki, Shino, Kuenen, J. Gijs, Schipper, Kira, van der Velde, Suzanne, Ishii, Shun’ichi, Wu, Angela, Sorokin, Dimitry Y., Tenney, Aaron, Meng, XianYing, Morrill, Penny L., Kamagata, Yoichi, Muyzer, Gerard, Nealson, Kenneth H.

“…Serpentinization, or the aqueous alteration of ultramafic rocks, results in challenging environments for life in continental sites due to the combination of…”
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Discovery of anaerobic lithoheterotrophic haloarchaea, ubiquitous in hypersaline habitats by Sorokin, Dimitry Y, Messina, Enzo, Smedile, Francesco, Roman, Pawel, Damsté, Jaap S Sinninghe, Ciordia, Sergio, Mena, Maria Carmen, Ferrer, Manuel, Golyshin, Peter N, Kublanov, Ilya V, Samarov, Nazar I, Toshchakov, Stepan V, La Cono, Violetta, Yakimov, Michail M

“…Hypersaline anoxic habitats harbour numerous novel uncultured archaea whose metabolic and ecological roles remain to be elucidated. Until recently, it was…”
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Sulfate-Reducing Bacteria That Produce Exopolymers Thrive in the Calcifying Zone of a Hypersaline Cyanobacterial Mat by Spring, Stefan, Sorokin, Dimitry Y, Verbarg, Susanne, Rohde, Manfred, Woyke, Tanja, Kyrpides, Nikos C

“…Calcifying microbial mats in hypersaline environments are important model systems for the study of the earliest ecosystems on Earth that started to appear more…”
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Trichlorobacter ammonificans, a dedicated acetate-dependent ammonifier with a novel module for dissimilatory nitrate reduction to ammonia by Sorokin, Dimitry Y., Tikhonova, Tamara V., Koch, Hanna, van den Berg, Eveline M., Hinderks, Renske S., Pabst, Martin, Dergousova, Natalia I., Soloveva, Anastasia Y., Kuenen, Gijs J., Popov, Vladimir O., van Loosdrecht, Mark C. M., Lücker, Sebastian

“…Dissimilatory nitrate reduction to ammonia (DNRA) is a common biochemical process in the nitrogen cycle in natural and man-made habitats, but its significance…”
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Sodium Energetic Cycle in the Natronophilic Bacterium Thioalkalivibrio versutus by Muntyan, Maria S, Viryasov, Mikhail B, Sorokin, Dimitry Y, Skulachev, Vladimir P

“…As inhabitants of soda lakes, are halo- and alkaliphilic bacteria that have previously been shown to respire with the first demonstrated Na -translocating…”
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Halo(natrono)archaea isolated from hypersaline lakes utilize cellulose and chitin as growth substrates by Sorokin, Dimitry Y, Toshchakov, Stepan V, Kolganova, Tatyana V, Kublanov, Ilya V

“…Until recently, extremely halophilic euryarchaeota were considered mostly as aerobic heterotrophs utilizing simple organic compounds as growth substrates…”
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Nitrolancea hollandica gen. nov., sp. nov., a chemolithoautotrophic nitrite-oxidizing bacterium isolated from a bioreactor belonging to the phylum Chloroflexi by Sorokin, Dimitry Y, Vejmelkova, Dana, Lücker, Sebastian, Streshinskaya, Galina M, Rijpstra, W. Irene C, Sinninghe Damsté, Jaap S, Kleerbezem, Robbert, van Loosdrecht, Mark, Muyzer, Gerard, Daims, Holger

“…A novel nitrite-oxidizing bacterium (NOB), strain LbT, was isolated from a nitrifying bioreactor with a high loading of ammonium bicarbonate in a mineral…”
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Natronoglomus mannanivorans gen. nov., sp. nov., beta-1,4-mannan utilizing natronoarchaea from hypersaline soda lakes by Sorokin, Dimitry Y, Elcheninov, Alexander G, Bale, Nicole J, Sinninghe Damsté, Jaap S, Kublanov, Ilya V

“…Beta-mannans are insoluble plant polysaccharides with beta-1,4-linked mannose as the backbone. We used three forms of this polysaccharide, namely, pure mannan,…”
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Trinuclear copper biocatalytic center forms an active site of thiocyanate dehydrogenase by Tikhonova, Tamara V., Sorokin, Dimitry Y., Hagen, Wilfred R., Khrenova, Maria G., Muyzer, Gerard, Rakitina, Tatiana V., Shabalin, Ivan G., Trofimov, Anton A., Tsallagov, Stanislav I., Popov, Vladimir O.

“…Biocatalytic copper centers are generally involved in the activation and reduction of dioxygen, with only few exceptions known. Here we report the discovery…”
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