Search Results - "Singer Ma"

Exploring TCGA Pan-Cancer Data at the UCSC Cancer Genomics Browser by Cline, Melissa S., Craft, Brian, Swatloski, Teresa, Goldman, Mary, Ma, Singer, Haussler, David, Zhu, Jingchun

“…The UCSC Cancer Genomics Browser ( https://genome-cancer.ucsc.edu ) offers interactive visualization and exploration of TCGA genomic, phenotypic and clinical…”
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RADIA: RNA and DNA integrated analysis for somatic mutation detection by Radenbaugh, Amie J, Ma, Singer, Ewing, Adam, Stuart, Joshua M, Collisson, Eric A, Zhu, Jingchun, Haussler, David

“…The detection of somatic single nucleotide variants is a crucial component to the characterization of the cancer genome. Mutation calling algorithms thus far…”
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The UCSC Cancer Genomics Browser: update 2013 by Goldman, Mary, Craft, Brian, Swatloski, Teresa, Ellrott, Kyle, Cline, Melissa, Diekhans, Mark, Ma, Singer, Wilks, Chris, Stuart, Josh, Haussler, David, Zhu, Jingchun

“…The UCSC Cancer Genomics Browser (https://genome-cancer.ucsc.edu/) is a set of web-based tools to display, investigate and analyse cancer genomics data and its…”
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Assessing structural variation in a personal genome-towards a human reference diploid genome by English, Adam C, Salerno, William J, Hampton, Oliver A, Gonzaga-Jauregui, Claudia, Ambreth, Shruthi, Ritter, Deborah I, Beck, Christine R, Davis, Caleb F, Dahdouli, Mahmoud, Ma, Singer, Carroll, Andrew, Veeraraghavan, Narayanan, Bruestle, Jeremy, Drees, Becky, Hastie, Alex, Lam, Ernest T, White, Simon, Mishra, Pamela, Wang, Min, Han, Yi, Zhang, Feng, Stankiewicz, Pawel, Wheeler, David A, Reid, Jeffrey G, Muzny, Donna M, Rogers, Jeffrey, Sabo, Aniko, Worley, Kim C, Lupski, James R, Boerwinkle, Eric, Gibbs, Richard A

“…Characterizing large genomic variants is essential to expanding the research and clinical applications of genome sequencing. While multiple data types and…”
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Modeling the role of negative cooperativity in metabolic regulation and homeostasis by Bush, Eliot C, Clark, Anne E, DeBoever, Chris M, Haynes, Lillian E, Hussain, Sidra, Ma, Singer, McDermott, Matthew B A, McDermott, Matthew M, Novak, Adam M, Wentworth, John S

“…A significant proportion of enzymes display cooperativity in binding ligand molecules, and such effects have an important impact on metabolic regulation. This…”
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Correction: Modeling the Role of Negative Cooperativity in Metabolic Regulation and Homeostasis by Bush, Eliot C., Clark, Anne E., DeBoever, Chris M., Haynes, Lillian E., Hussain, Sidra, Ma, Singer, McDermott, Matthew B.A., Novak, Adam M., Wentworth, John S.

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Genomic Classification of Cutaneous Melanoma by Aksoy, B. Arman, Amin, Samirkumar B., Bartlett, John, Behera, Madhusmita, Bernard, Brady, Boice, Lori, Brzezinski, Jakub, Cappellini, Giancarlo Antonini, Chevalier, Aaron, Cho, Juok, Cho, Raymond J., Chudamani, Sudha, Clarke, Amanda, Coons, Stephen, Cope, Leslie, Davidsen, Tanja, Davies, Michael A., Delman, Keith A., Dhalla, Noreen, Dubina, Michael, Ebrom, J. Stephen, Eley, Greg, Gao, Jianjiong, Gardner, Johanna, Garraway, Levi A., Gastier-Foster, Julie M., Gaudioso, Carmelo, Getz, Gad, Gomez-Fernandez, Carmen, Hadjipanayis, Angela, Halaban, Ruth, Hayes, D. Neil, Hoadley, Katherine A., Huang, Mei, Jones, Steven J.M., Ju, Zhenlin, Kim, Jaegil, Kirkwood, John M., Krauthammer, Michael, Kwong, Lawrence N., Ladanyi, Marc, Łaźniak, Radoslaw, Lee, Darlene, Liu, Jia, Liu, Wenbin, Long, Georgina V., Ma, Singer, Manikhas, Georgy M., Mann, Graham J., Mayo, Michael, Mehrabi, Sousan, Meng, Shaowu, Meyerson, Matthew, Mieczkowski, Piotr A., Miller, Martin L., Moschos, Stergios, Murawa, Dawid, Ozenberger, Bradley A., Parfitt, Jeremy, Perou, Charles M., Pihl, Todd D., Quinn, Michael J., Radenbaugh, Amie, Ramirez, Nilsa C., Ramirez, Ricardo, Ren, Xiaojia, Reynolds, Sheila M., Robertson, A. Gordon, Roszik, Jason, Saller, Charles, Santoso, Netty, Schein, Jacqueline E., Scolyer, Richard A., Sekhar, Pedamallu Chandra, Shannon, Kerwin F., Sharpless, Norman E., Shelton, Candace, Sheth, Margi, Shi, Yan, Sica, Gabriel L., Sofia, Heidi J., Spillane, Andrew J., Stuart, Joshua, Sun, Yichao, Tam, Angela, Veluvolu, Umadevi, Voronina, Olga, Walter, Vonn, Wan, Yunhu, Watson, Ian R., White, Peter, Wilkerson, Matthew D., Wu, Junyuan, Xu, Andrew Wei, Yang, Da, Yang, Liming, Yang, Lixing, Zhang, Hailei, Zhang, Jianhua, Zmuda, Erik

“…We describe the landscape of genomic alterations in cutaneous melanomas through DNA, RNA, and protein-based analysis of 333 primary and/or metastatic melanomas…”
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St. Jude Cloud: A Pediatric Cancer Genomic Data-Sharing Ecosystem by McLeod, Clay, Gout, Alexander M, Zhou, Xin, Thrasher, Andrew, Rahbarinia, Delaram, Brady, Samuel W, Macias, Michael, Birch, Kirby, Finkelstein, David, Sunny, Jobin, Mudunuri, Rahul, Orr, Brent A, Treadway, Madison, Davidson, Bob, Ard, Tracy K, Chiao, Arthur, Swistak, Andrew, Wiggins, Stephanie, Foy, Scott, Wang, Jian, Sioson, Edgar, Wang, Shuoguo, Michael, J Robert, Liu, Yu, Ma, Xiaotu, Patel, Aman, Edmonson, Michael N, Wilkinson, Mark R, Frantz, Andrew M, Chang, Ti-Cheng, Tian, Liqing, Lei, Shaohua, Islam, S M Ashiqul, Meyer, Christopher, Thangaraj, Naina, Tater, Pamella, Kandali, Vijay, Ma, Singer, Nguyen, Tuan, Serang, Omar, McGuire, Irina, Robison, Nedra, Gentry, Darrell, Tang, Xing, Palmer, Lance E, Wu, Gang, Suh, Ed, Tanner, Leigh, McMurry, James, Lear, Matthew, Pappo, Alberto S, Wang, Zhaoming, Wilson, Carmen L, Cheng, Yong, Meshinchi, Soheil, Alexandrov, Ludmil B, Weiss, Mitchell J, Armstrong, Gregory T, Robison, Leslie L, Yasui, Yutaka, Nichols, Kim E, Ellison, David W, Bangur, Chaitanya, Mullighan, Charles G, Baker, Suzanne J, Dyer, Michael A, Miller, Geralyn, Newman, Scott, Rusch, Michael, Daly, Richard, Perry, Keith, Downing, James R, Zhang, Jinghui

“…Effective data sharing is key to accelerating research to improve diagnostic precision, treatment efficacy, and long-term survival in pediatric cancer and…”
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Children Learn When Their Teacher's Gestures and Speech Differ by Singer, Melissa A., Coldin-Meadow, Susan

“…Teachers gesture when they teach, and those gestures do not always convey the same information as their speech. Gesture thus offers learners a second message…”
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Prevalence and duration of detectable SARS-CoV-2 nucleocapsid antibodies in staff and residents of long-term care facilities over the first year of the pandemic (VIVALDI study): prospective cohort study in England by Krutikov, Maria, Palmer, Tom, Tut, Gokhan, Fuller, Christopher, Azmi, Borscha, Giddings, Rebecca, Shrotri, Madhumita, Kaur, Nayandeep, Sylla, Panagiota, Lancaster, Tara, Irwin-Singer, Aidan, Hayward, Andrew, Moss, Paul, Copas, Andrew, Shallcross, Laura

“…Long-term care facilities (LTCFs) have reported high SARS-CoV-2 infection rates and related mortality, but the proportion of infected people among those who…”
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A high-resolution map of active promoters in the human genome by Ren, Bing, Kim, Tae Hoon, Barrera, Leah O, Zheng, Ming, Qu, Chunxu, Singer, Michael A, Richmond, Todd A, Wu, Yingnian, Green, Roland D

“…In eukaryotic cells, transcription of every protein-coding gene begins with the assembly of an RNA polymerase II preinitiation complex (PIC) on the promoter…”
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Wnt10b deficiency results in age‐dependent loss of bone mass and progressive reduction of mesenchymal progenitor cells by Stevens, Jennifer R, Miranda‐Carboni, Gustavo A, Singer, Meredith A, Brugger, Sean M, Lyons, Karen M, Lane, Timothy F

“…Wnt10b is a canonical Wnt ligand expressed in developing bone and has been linked to mesenchymal progenitor functions in mice and humans. Because Wnt signaling…”
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Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome by Bieda, Mark, Xu, Xiaoqin, Singer, Michael A, Green, Roland, Farnham, Peggy J

“…The E2F family of transcription factors regulates basic cellular processes. Here, we take an unbiased approach towards identifying E2F1 target genes by…”
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Incidence of SARS-CoV-2 infection according to baseline antibody status in staff and residents of 100 long-term care facilities (VIVALDI): a prospective cohort study by Krutikov, Maria, Palmer, Tom, Tut, Gokhan, Fuller, Chris, Shrotri, Madhumita, Williams, Haydn, Davies, Daniel, Irwin-Singer, Aidan, Robson, James, Hayward, Andrew, Moss, Paul, Copas, Andrew, Shallcross, Laura

“…SARS-CoV-2 infection represents a major challenge for long-term care facilities (LTCFs) and many residents and staff are seropositive following persistent…”
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From Children's Hands to Adults' Ears: Gesture's Role in the Learning Process by Goldin-Meadow, Susan, Singer, Melissa A

“…Children can express thoughts in gesture that they do not express in speech-they produce gesture-speech mismatches. Moreover, children who produce mismatches…”
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Quantitative analysis of Cryptosporidium growth in in vitro culture—the impact of parasite density on the success of infection by Paziewska-Harris, Anna, Singer, Martin, Schoone, Gerard, Schallig, Henk

“…Cryptosporidium is an important waterborne pathogen for which no treatment or vaccination is available. This study set out to quantify DNA replication of…”
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RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection by Radenbaugh, Amie J, Ma, Singer, Ewing, Adam, Stuart, Joshua, Collisson, Eric, Zhu, Jingchun, Haussler, David

“…The detection of somatic single nucleotide variants is a crucial component to the characterization of the cancer genome. Mutation calling algorithms thus far…”
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A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac by Thibault, Stephen T, Singer, Matthew A, Miyazaki, Wesley Y, Milash, Brett, Dompe, Nicholas A, Singh, Carol M, Buchholz, Ross, Demsky, Madelyn, Fawcett, Robert, Francis-Lang, Helen L, Ryner, Lisa, Cheung, Lai Man, Chong, Angela, Erickson, Cathy, Fisher, William W, Greer, Kimberly, Hartouni, Stephanie R, Howie, Elizabeth, Jakkula, Lakshmi, Joo, Daniel, Killpack, Keith, Laufer, Alex, Mazzotta, Julie, Smith, Ronald D, Stevens, Lynn M, Stuber, Christiana, Tan, Lory R, Ventura, Richard, Woo, Alesa, Zakrajsek, Irena, Zhao, Lora, Chen, Feng, Swimmer, Candace, Kopczynski, Casey, Duyk, Geoffrey, Winberg, Margaret L, Margolis, Jonathan

“…With the availability of complete genome sequence for Drosophila melanogaster, one of the next strategic goals for fly researchers is a complete gene knockout…”
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Systematic generation of high-resolution deletion coverage of the Drosophila melanogaster genome by Friedman, Lori, Deal, Jennifer E, Howie, Elizabeth, Tan, Lory R, Edgar, Kyle A, Plowman, Gregory D, Marcinko, Marie, Winter, Christopher G, Milash, Brett, Winner, Millicent A, Cook, Kevin R, Parks, Annette L, Belvin, Marcia, Fawcett, Robert, Andrade, Rachel S, Kopczynski, Casey, Killpack, Keith, Duyk, Geoffrey, Grant, Deanna, Shaw, Kenneth J, Huppert, Kari, Miyazaki, Wesley Y, Margolis, Jonathan, Tabios, Mariano, Thao, Doua, Vysotskaia, Valentina, Kaufman, Thomas C, Zhao, Lora, Francis-Lang, Helen L, Robertson, Stephanie, Dompe, Nicholas A, Curtis, Daniel, Whittaker, Kellie, Deal-Herr, Megan E, Norton, Amanda, Bogart, Kevin P, Singer, Matthew A

“…In fruit fly research, chromosomal deletions are indispensable tools for mapping mutations, characterizing alleles and identifying interacting loci. Most…”
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Clinical Applicability of Microbiota Sampling in a Subfertile Population: Urine versus Vagina by Koedooder, Rivka, Schoenmakers, Sam, Singer, Martin, Bos, Martine, Poort, Linda, Savelkoul, Paul, Morré, Servaas, de Jonge, Jonathan, Budding, Dries, Laven, Joop

“…The urogenital microbiota is increasingly gaining recognition as a significant contributor to reproductive health. Recent studies suggest that microbiota can…”
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