Search Results - "Simonet, Pascal"

Microbial mass movements by Zhu, Yong-Guan, Gillings, Michael, Simonet, Pascal, Stekel, Dov, Banwart, Steve, Penuelas, Josep

“…Wastewater, tourism, and trade are moving microbes around the globe at an unprecedented scale For several billion years, microorganisms and the genes they…”
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Soil-specific limitations for access and analysis of soil microbial communities by metagenomics by Lombard, Nathalie, Prestat, Emmanuel, van Elsas, Jan Dirk, Simonet, Pascal

“…Abstract Metagenomics approaches represent an important way to acquire information on the microbial communities present in complex environments like soil…”
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Accessing the Soil Metagenome for Studies of Microbial Diversity by Delmont, Tom O, Robe, Patrick, Cecillon, Sébastien, Clark, Ian M, Constancias, Florentin, Simonet, Pascal, Hirsch, Penny R, Vogel, Timothy M

“…Soil microbial communities contain the highest level of prokaryotic diversity of any environment, and metagenomic approaches involving the extraction of DNA…”
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Soil bacterial community shifts after chitin enrichment: an integrative metagenomic approach by Jacquiod, Samuel, Franqueville, Laure, Cécillon, Sébastien, Vogel, Timothy M, Simonet, Pascal

“…Chitin is the second most produced biopolymer on Earth after cellulose. Chitin degrading enzymes are promising but untapped sources for developing novel…”
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Influence of humans on evolution and mobilization of environmental antibiotic resistome by Gaze, William H, Krone, Stephen M, Larsson, D G Joakim, Li, Xian-Zhi, Robinson, Joseph A, Simonet, Pascal, Smalla, Kornelia, Timinouni, Mohammed, Topp, Ed, Wellington, Elizabeth M, Wright, Gerard D, Zhu, Yong-Guan

“…The clinical failure of antimicrobial drugs that were previously effective in controlling infectious disease is a tragedy of increasing magnitude that gravely…”
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Structure, fluctuation and magnitude of a natural grassland soil metagenome by Delmont, Tom O, Prestat, Emmanuel, Keegan, Kevin P, Faubladier, Michael, Robe, Patrick, Clark, Ian M, Pelletier, Eric, Hirsch, Penny R, Meyer, Folker, Gilbert, Jack A, Le Paslier, Denis, Simonet, Pascal, Vogel, Timothy M

“…The soil ecosystem is critical for human health, affecting aspects of the environment from key agricultural and edaphic parameters to critical influence on…”
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Metagenomic comparison of direct and indirect soil DNA extraction approaches by Delmont, Tom O., Robe, Patrick, Clark, Ian, Simonet, Pascal, Vogel, Timothy M.

“…Full pyrosequencing runs of both direct-extracted (high yield, low DNA size) and indirect-extracted DNA (low yield, high DNA size) from the same prairie soil…”
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Microbial community development and unseen diversity recovery in inoculated sterile soil by Delmont, Tom O, Francioli, Davide, Jacquesson, Sophie, Laoudi, Sandra, Mathieu, Alban, Nesme, Joseph, Ceccherini, Maria Teresa, Nannipieri, Paolo, Simonet, Pascal, Vogel, Timothy M

“…Soil is considered as one of the most biodiverse environments on Earth; yet, the taxonomy, occurrence, and role of its different microbial populations are…”
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Life on human surfaces: skin metagenomics by Mathieu, Alban, Delmont, Tom O, Vogel, Timothy M, Robe, Patrick, Nalin, Renaud, Simonet, Pascal

“…The human skin microbiome could provide another example, after the gut, of the strong positive or negative impact that human colonizing bacteria can have on…”
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Antibiotic-Resistant Soil Bacteria in Transgenic Plant Fields by Demanèche, Sandrine, Sanguin, Hervé, Poté, John, Navarro, Elisabeth, Bernillon, Dominique, Mavingui, Patrick, Wildi, Walter, Vogel, Timothy M., Simonet, Pascal

“…Understanding the prevalence and polymorphism of antibiotic resistance genes in soil bacteria and their potential to be transferred horizontally is required to…”
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Eukaryotic Cell Capture by Amplified Magnetic in situ Hybridization Using Yeast as a Model by Bastian, Fabiola, Melayah, Delphine, Hugoni, Mylène, Dempsey, Nora M, Simonet, Pascal, Frenea-Robin, Marie, Fraissinet-Tachet, Laurence

“…A non-destructive approach based on magnetic hybridization (MISH) and hybridization chain reaction (HCR) for the specific capture of eukaryotic cells has been…”
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Interdisciplinary methodological framework of biomechanics and occupational psychology for MSD prevention by Savescu, Adriana, Simonet, Pascal, Gaudez, Clarisse, Fernandez, Gabriel

“…In France and globally, musculoskeletal disorders (MSD) remain the most widespread occupational diseases. The scientific literature has established that links…”
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Micro-fractionation shows microbial community changes in soil particles below 20 μm by Keuschnig, Christoph, Martins, Jean M. F., Navel, Aline, Simonet, Pascal, Larose, Catherine

“…Introduction Micro-scale analysis of microbes in soil is essential to the overall understanding of microbial organization, interactions, and ecosystem…”
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Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics by Delmont, Tom O, Eren, A Murat, Maccario, Lorrie, Prestat, Emmanuel, Esen, Özcan C, Pelletier, Eric, Le Paslier, Denis, Simonet, Pascal, Vogel, Timothy M

“…Despite extensive direct sequencing efforts and advanced analytical tools, reconstructing microbial genomes from soil using metagenomics have been challenging…”
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Micro-magnet arrays for specific single bacterial cell positioning by Pivetal, Jérémy, Royet, David, Ciuta, Georgeta, Frenea-Robin, Marie, Haddour, Naoufel, Dempsey, Nora M., Dumas-Bouchiat, Frédéric, Simonet, Pascal

“…In various contexts such as pathogen detection or analysis of microbial diversity where cellular heterogeneity must be taken into account, there is a growing…”
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Visual Evidence of Horizontal Gene Transfer between Plants and Bacteria in the Phytosphere of Transplastomic Tobacco by Pontiroli, Alessandra, Rizzi, Aurora, Simonet, Pascal, Daffonchio, Daniele, Vogel, Timothy M, Monier, Jean-Michel

“…Plant surfaces, colonized by numerous and diverse bacterial species, are often considered hot spots for horizontal gene transfer (HGT) between plants and…”
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Variability in the Response of Bacterial Community Assembly to Environmental Selection and Biotic Factors Depends on the Immigrated Bacteria, as Revealed by a Soil Microcosm Experiment by Wu, Xiaogang, Wang, Yun, Zhu, Ying, Tian, Hao, Qin, Xianchao, Cui, Changzheng, Zhao, Liping, Simonet, Pascal, Zhang, Xiaojun

“…Exploring the assembly mechanism of microbiota is critical for understanding soil ecosystem functions. However, the relative importance of different biotic and…”
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RisaAligner software for aligning fluorescence data between Agilent 2100 Bioanalyzer chips: Application to soil microbial community analysis by Navarro, Elisabeth, Fabrègue, Olivier, Scorretti, Riccardo, Reboulet, Jérémy, Simonet, Pascal, Dawson, Lorna, Demanèche, Sandrine

“…Ribosomal Intergenic Spacer Analysis (RISA) is a high-resolution and highly reproducible fingerprinting technique for discriminating between microbial…”
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Characterization of Denitrification Gene Clusters of Soil Bacteria via a Metagenomic Approach by Demanèche, Sandrine, Philippot, Laurent, David, Maude M, Navarro, Elisabeth, Vogel, Timothy M, Simonet, Pascal

“…We characterized operons encoding enzymes involved in denitrification, a nitrogen-cycling process involved in nitrogen losses and greenhouse gas emission,…”
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The soil resistome: a critical review on antibiotic resistance origins, ecology and dissemination potential in telluric bacteria by Nesme, Joseph, Simonet, Pascal

“…Summary Soil is a large reservoir of microbial diversity and the majority of antimicrobial compounds used today in human and veterinary health care have been…”
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