Search Results - "Silva, Diogo N."

The coffee leaf rust pathogen Hemileia vastatrix: one and a half centuries around the tropics by Talhinhas, Pedro, Batista, Dora, Diniz, Inês, Vieira, Ana, Silva, Diogo N., Loureiro, Andreia, Tavares, Sílvia, Pereira, Ana Paula, Azinheira, Helena G., Guerra‐Guimarães, Leonor, Várzea, Vítor, Silva, Maria do Céu

“…Summary Taxonomy and History Hemileia vastatrix Berk. and Broome (Basidiomycota, Pucciniales) was described in 1869 in eastern Africa and Ceylon as the agent…”
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Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data by Jesus, Tiago F, Ribeiro-Gonçalves, Bruno, Silva, Diogo N, Bortolaia, Valeria, Ramirez, Mário, Carriço, João A

“…Abstract Plasmid ATLAS (pATLAS, http://www.patlas.site) provides an easy-to-use web accessible database with visual analytics tools to explore the…”
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Evolutionary and Biogeographic Insights on the Macaronesian Beta-Patellifolia Species (Amaranthaceae) from a Time-Scaled Molecular Phylogeny by Romeiras, Maria M, Vieira, Ana, Silva, Diogo N, Moura, Monica, Santos-Guerra, Arnoldo, Batista, Dora, Duarte, Maria Cristina, Paulo, Octávio S

“…The Western Mediterranean Region and Macaronesian Islands are one of the top biodiversity hotspots of Europe, containing a significant native genetic diversity…”
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Genomic Patterns of Positive Selection at the Origin of Rust Fungi by Silva, Diogo N, Duplessis, Sebastien, Talhinhas, Pedro, Azinheira, Helena, Paulo, Octávio S, Batista, Dora

“…Understanding the origin and evolution of pathogenicity and biotrophic life-style of rust fungi has remained a conundrum for decades. Research on the molecular…”
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New mitochondrial and nuclear evidences support recent demographic expansion and an atypical phylogeographic pattern in the spittlebug Philaenus spumarius (Hemiptera, Aphrophoridae) by Rodrigues, Ana S B, Silva, Sara E, Marabuto, Eduardo, Silva, Diogo N, Wilson, Mike R, Thompson, Vinton, Yurtsever, Selçuk, Halkka, Antti, Borges, Paulo A V, Quartau, José A, Paulo, Octávio S, Seabra, Sofia G

“…Philaenus spumarius is a widespread insect species in the Holarctic region. Here, by focusing on the mtDNA gene COI but also using the COII and Cyt b genes and…”
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Legitimacy and Implications of Reducing Colletotrichum kahawae to Subspecies in Plant Pathology by Batista, Dora, Silva, Diogo N, Vieira, Ana, Cabral, Ana, Pires, Ana S, Loureiro, Andreia, Guerra-Guimarães, Leonor, Pereira, Ana P, Azinheira, Helena, Talhinhas, Pedro, Silva, Maria do Céu, Várzea, Vitor

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Structure_threader: An improved method for automation and parallelization of programs structure, fastStructure and MavericK on multicore CPU systems by Pina‐Martins, Francisco, Silva, Diogo N., Fino, Joana, Paulo, Octávio S.

“…Structure_threader is a program to parallelize multiple runs of genetic clustering software that does not make use of multithreading technology (structure,…”
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chewBBACA: A complete suite for gene-by-gene schema creation and strain identification by Silva, Mickael, Machado, Miguel P, Silva, Diogo N, Rossi, Mirko, Moran-Gilad, Jacob, Santos, Sergio, Ramirez, Mario, Carriço, João André

“…Gene-by-gene approaches are becoming increasingly popular in bacterial genomic epidemiology and outbreak detection. However, there is a lack of open-source…”
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Host-jump drives rapid and recent ecological speciation of the emergent fungal pathogen Colletotrichum kahawae by SILVA, DIOGO N., TALHINHAS, PEDRO, CAI, LEI, MANUEL, LUZOLO, GICHURU, ELIJAH K., LOUREIRO, ANDREIA, VÁRZEA, VÍTOR, PAULO, OCTÁVIO S., BATISTA, DORA

“…Ecological speciation through host‐shift has been proposed as a major route for the appearance of novel fungal pathogens. The growing awareness of their…”
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The effect of the Messinian salinity crisis on the early diversification of the Tettigettalna cicadas by Costa, Gonçalo J., Nunes, Vera L., Marabuto, Eduardo, Mendes, Raquel, Silva, Diogo N., Pons, Pere, Bas, Josep M., Hertach, Thomas, Paulo, Octávio S., Simões, Paula C.

“…The current distribution patterns of many Mediterranean species are often a consequence of large and impactful past geoclimatic events, such as the Messinian…”
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Age estimates of Frullania (Frullaniaceae, Porellales) main lineages: another example of rapid and recent diversification in liverwort evolution by Silva, Sara E., Silva, Diogo N., Almeida, Tereza, Garcia, CÉsar A., Paulo, OctÁvio S., Sim-sim, Manuela

“…Frullania Raddi is an extant genus of liverworts (Bryophytes) widespread around the world. It belongs to the family Frullaniaceae Lorch., with a large number…”
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DEN-IM: dengue virus genotyping from amplicon and shotgun metagenomic sequencing by Mendes, Inês, Lizarazo, Erley, Machado, Miguel, Silva, Diogo, Tami, Adriana, Ramos de Almeida Ramirez, Mário Nuno, Couto, Natacha, Rossen, John W. A., Carrico, Joao

“…© 2020 The Authors. This is an open-access article distributed under the terms of the Creative Commons Attribution License. Dengue virus (DENV) represents a…”
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Worldwide population structure of the coffee rust fungus Hemileia vastatrix is strongly shaped by local adaptation and breeding history by Rodrigues, Ana Sofia, Silva, Diogo N, Várzea, Vitor, Paulo, Octávio S, Batista, Dora

“…The devastating disease Coffee Leaf Rust, caused by ( ), has been the major constraint to worldwide coffee production. Recently, populations were shown to be…”
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Genomic Patterns of Positive Selection at the Origin of Rust Fungi: e0143959 by Silva, Diogo N, Duplessis, Sebastien, Talhinhas, Pedro, Azinheira, Helena, Paulo, Octavio S, Batista, Dora

“…Understanding the origin and evolution of pathogenicity and biotrophic life-style of rust fungi has remained a conundrum for decades. Research on the molecular…”
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New Mitochondrial and Nuclear Evidences Support Recent Demographic Expansion and an Atypical Phylogeographic Pattern in the Spittlebug Philaenus spumarius (Hemiptera, Aphrophoridae): e98375 by Rodrigues, Ana SB, Silva, Sara E, Marabuto, Eduardo, Silva, Diogo N, Wilson, Mike R, Thompson, Vinton, Yurtsever, Selcuk, Halkka, Antti, Borges, Paulo AV, Quartau, Jose A

“…Philaenus spumarius is a widespread insect species in the Holarctic region. Here, by focusing on the mtDNA gene COI but also using the COII and Cyt b genes and…”
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Estudo preliminar para a remediação de áreas rurais após um acidente nuclear ou radiológico by Rochedo, Elaine, Silva, Diogo, de-Luca, Christiano, Rochedo, Pedro, Wasserman, Maria Angélica, Perez, Daniel

“…The assessment of protective and remediation measures for rural areas is more complex than that for urban areas, due to the strong influence of large number of…”
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