Search Results - "Silva, Adriano Barbosa"

PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries by Barbosa-Silva, Adriano, Fontaine, Jean-Fred, Donnard, Elisa R, Stussi, Fernanda, Ortega, J Miguel, Andrade-Navarro, Miguel A

“…Biological function is greatly dependent on the interactions of proteins with other proteins and genes. Abstracts from the biomedical literature stored in the…”
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Mapping global dynamics of benchmark creation and saturation in artificial intelligence by Ott, Simon, Barbosa-Silva, Adriano, Blagec, Kathrin, Brauner, Jan, Samwald, Matthias

“…Benchmarks are crucial to measuring and steering progress in artificial intelligence (AI). However, recent studies raised concerns over the state of AI…”
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A reference guide for tree analysis and visualization by Pavlopoulos, Georgios A, Soldatos, Theodoros G, Barbosa-Silva, Adriano, Schneider, Reinhard

“…The quantities of data obtained by the new high-throughput technologies, such as microarrays or ChIP-Chip arrays, and the large-scale OMICS-approaches, such as…”
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A curated, ontology-based, large-scale knowledge graph of artificial intelligence tasks and benchmarks by Blagec, Kathrin, Barbosa-Silva, Adriano, Ott, Simon, Samwald, Matthias

“…Research in artificial intelligence (AI) is addressing a growing number of tasks through a rapidly growing number of models and methodologies. This makes it…”
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LAITOR4HPC: A text mining pipeline based on HPC for building interaction networks by Piereck, Bruna, Oliveira-Lima, Marx, Benko-Iseppon, Ana Maria, Diehl, Sarah, Schneider, Reinhard, Brasileiro-Vidal, Ana Christina, Barbosa-Silva, Adriano

“…The amount of published full-text articles has increased dramatically. Text mining tools configure an essential approach to building biological networks,…”
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Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium by Gu, Wei, Yildirimman, Reha, Van der Stuyft, Emmanuel, Verbeeck, Denny, Herzinger, Sascha, Satagopam, Venkata, Barbosa-Silva, Adriano, Schneider, Reinhard, Lange, Bodo, Lehrach, Hans, Guo, Yike, Henderson, David, Rowe, Anthony

“…For large international research consortia, such as those funded by the European Union's Horizon 2020 programme or the Innovative Medicines Initiative, good…”
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Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases by Satagopam, Venkata, Gu, Wei, Eifes, Serge, Gawron, Piotr, Ostaszewski, Marek, Gebel, Stephan, Barbosa-Silva, Adriano, Balling, Rudi, Schneider, Reinhard

“…Translational medicine is a domain turning results of basic life science research into new tools and methods in a clinical environment, for example, as new…”
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LAITOR--Literature Assistant for Identification of Terms co-Occurrences and Relationships by Barbosa-Silva, Adriano, Soldatos, Theodoros G, Magalhães, Ivan L F, Pavlopoulos, Georgios A, Fontaine, Jean-Fred, Andrade-Navarro, Miguel A, Schneider, Reinhard, Ortega, J Miguel

“…Biological knowledge is represented in scientific literature that often describes the function of genes/proteins (bioentities) in terms of their interactions…”
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LinkExplorer: predicting, explaining and exploring links in large biomedical knowledge graphs by Ott, Simon, Barbosa-Silva, Adriano, Samwald, Matthias

“…Abstract Summary Machine learning algorithms for link prediction can be valuable tools for hypothesis generation. However, many current algorithms are black…”
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Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence by Barbosa-Silva, Adriano, Satagopam, Venkata P, Schneider, Reinhard, Ortega, J Miguel

“…Modern proteomes evolved by modification of pre-existing ones. It is extremely important to comparative biology that related proteins be identified as members…”
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Caipirini: using gene sets to rank literature by Soldatos, Theodoros G, O'Donoghue, Seán I, Satagopam, Venkata P, Barbosa-Silva, Adriano, Pavlopoulos, Georgios A, Wanderley-Nogueira, Ana Carolina, Soares-Cavalcanti, Nina Mota, Schneider, Reinhard

“…Keeping up-to-date with bioscience literature is becoming increasingly challenging. Several recent methods help meet this challenge by allowing literature…”
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uORFdb--a comprehensive literature database on eukaryotic uORF biology by Wethmar, Klaus, Barbosa-Silva, Adriano, Andrade-Navarro, Miguel A, Leutz, Achim

“…Approximately half of all human transcripts contain at least one upstream translational initiation site that precedes the main coding sequence (CDS) and gives…”
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SmartR: an open-source platform for interactive visual analytics for translational research data by Herzinger, Sascha, Gu, Wei, Satagopam, Venkata, Eifes, Serge, Rege, Kavita, Barbosa-Silva, Adriano, Schneider, Reinhard

“…In translational research, efficient knowledge exchange between the different fields of expertise is crucial. An open platform that is capable of storing a…”
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Nonfunctional parathyroid cyst: case report by Nardi, Carlos Eduardo Molinari, Silva, Ricardo Adriano Nasser Barbosa da, Serafim, Cynthia Maria Massarico, Dedivitis, Rogério Aparecido

“…Parathyroid cysts are rare clinical and pathological entities, with less than 300 cases reported. The inferior parathyroid glands are most commonly involved,…”
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Classification of non-Hodgkin lymphomas based on sample entropy signatures by Rozendo, Guilherme Botazzo, do Nascimento, Marcelo Zanchetta, Roberto, Guilherme Freire, de Faria, Paulo Rogério, Silva, Adriano Barbosa, Tosta, Thaína Aparecida Azevedo, Neves, Leandro Alves

“…Computational systems to provide studies and diagnoses of non-Hodgkin’s lymphomas have been increasingly developed to assist specialists in their…”
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Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sections by Silva, Adriano Barbosa, Martins, Alessandro Santana, Tosta, Thaína Aparecida Azevedo, Neves, Leandro Alves, Servato, João Paulo Silva, de Araújo, Marcelo Sivieri, de Faria, Paulo Rogério, do Nascimento, Marcelo Zanchetta

“…Oral epithelial dysplasia is a precancerous lesion that presents alterations in the shape and size of cell nuclei and can be graded as mild, moderate and…”
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Génie: literature-based gene prioritization at multi genomic scale by Fontaine, Jean-Fred, Priller, Florian, Barbosa-Silva, Adriano, Andrade-Navarro, Miguel A.

“…Biomedical literature is traditionally used as a way to inform scientists of the relevance of genes in relation to a research topic. However many genes,…”
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OralEpitheliumDB: A Dataset for Oral Epithelial Dysplasia Image Segmentation and Classification by Silva, Adriano Barbosa, Martins, Alessandro Santana, Tosta, Thaína Aparecida Azevedo, Loyola, Adriano Mota, Cardoso, Sérgio Vitorino, Neves, Leandro Alves, de Faria, Paulo Rogério, do Nascimento, Marcelo Zanchetta

“…Early diagnosis of potentially malignant disorders, such as oral epithelial dysplasia, is the most reliable way to prevent oral cancer. Computational…”
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Presenting and sharing clinical data using the eTRIKS Standards Master Tree for tranSMART by Barbosa-Silva, Adriano, Bratfalean, Dorina, Gu, Wei, Satagopam, Venkata, Houston, Paul, Becnel, Lauren B, Eifes, Serge, Richard, Fabien, Tielmann, Andreas, Herzinger, Sascha, Rege, Kavita, Balling, Rudi, Peeters, Paul, Schneider, Reinhard

“…Standardization and semantic alignment have been considered one of the major challenges for data integration in clinical research. The inclusion of the CDISC…”
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Modulation of defence and iron homeostasis genes in rice roots by the diazotrophic endophyte Herbaspirillum seropedicae by Brusamarello-Santos, Liziane Cristina Campos, Alberton, Dayane, Valdameri, Glaucio, Camilios-Neto, Doumit, Covre, Rafael, Lopes, Katia de Paiva, Zibetti Tadra-Sfeir, Michelle, Faoro, Helisson, Adele Monteiro, Rose, Barbosa-Silva, Adriano, John Broughton, William, Oliveira Pedrosa, Fabio, Wassem, Roseli, Souza, Emanuel Maltempi de

“…Rice is staple food of nearly half the world’s population. Rice yields must therefore increase to feed ever larger populations. By colonising rice and other…”
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