Search Results - "Shyu, Conrad"

MiCA: A Web-Based Tool for the Analysis of Microbial Communities Based on Terminal-Restriction Fragment Length Polymorphisms of 16S and 18S rRNA Genes by Shyu, Conrad, Soule, Terry, Bent, Stephen J., Foster, James A., Forney, Larry J.

“…A web-based resource, Microbial Community Analysis (MiCA), has been developed to facilitate studies on microbial community ecology that use analyses of…”
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METAGENOTE: a simplified web platform for metadata annotation of genomic samples and streamlined submission to NCBI’s sequence read archive by Quiéones, Mariam, Liou, David T, Shyu, Conrad, Kim, Wongyu, Vujkovic-Cvijin, Ivan, Belkaid, Yasmine, Hurt, Darrell E

“…Abstract Background The improvements in genomics methods coupled with readily accessible high-throughput sequencing have contributed to our understanding of…”
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Advances in the use of terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes to characterize microbial communities by Schütte, Ursel M. E, Abdo, Zaid, Bent, Stephen J, Shyu, Conrad, Williams, Christopher J, Pierson, Jacob D, Forney, Larry J

“…Terminal restriction fragment length polymorphism (T-RFLP) analysis is a popular high-throughput fingerprinting technique used to monitor changes in the…”
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Computational study of evolutionary selection pressure on rainbow trout estrogen receptors by Shyu, Conrad, Brown, Celeste J, Ytreberg, F Marty

“…Molecular dynamics simulations were used to determine the binding affinities between the hormone 17-estradiol (E2) and different estrogen receptor (ER)…”
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Polynomial Fitting Techniques for Accurate Estimation of Solvation Free Energy Using Thermodynamic Integration by Shyu, Conrad, Ytreberg, F. Marty

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Computational Studies of Evolutionary Selection Pressure on Rainbow Trout Estrogen Receptors by Shyu, Conrad, Ytreberg, F. Marty

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Numerical Techniques to Optimize Free Energy Estimation Using Thermodynamic Integration by Shyu, Conrad, Ytreberg, F. Marty

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Accurate estimation of solvation free energy using polynomial fitting techniques by Shyu, Conrad, Ytreberg, F. Marty

“…This report details an approach to improve the accuracy of free energy difference estimates using thermodynamic integration data (slope of the free energy with…”
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Reducing the bias and uncertainty of free energy estimates by using regression to fit thermodynamic integration data by Shyu, Conrad, Ytreberg, F. Marty

“…This report presents the application of polynomial regression for estimating free energy differences using thermodynamic integration data, i.e., slope of free…”
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Computational estimation of rainbow trout estrogen receptor binding affinities for environmental estrogens by Shyu, Conrad, Cavileer, Timothy D., Nagler, James J., Ytreberg, F. Marty

“…Environmental estrogens have been the subject of intense research due to their documented detrimental effects on the health of fish and wildlife and their…”
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Electronic polymerase chain reaction (EPCR) search algorithm by Conrad Shyu, Foster, J.A., Forney, L.J.

“…We developed an integer-encoding scheme and a search algorithm for in silico PCR (polymerase chain reaction) amplification that identifies sequence homology…”
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Multiple Sequence Alignment with Evolutionary Computation by Shyu, Conrad, Sheneman, Luke, Foster, James A.

“…In this paper we provide a brief review of current work in the area of multiple sequence alignment (MSA) for DNA and protein sequences using evolutionary…”
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Qualitative assessments and computational techniques for the studies of microbial diversity based on terminal restriction fragment length polymorphism (T-RFLP) of 16S and 18S rRNA gene sequences by Shyu, Conrad

“…This thesis presents the qualitative assessments and computational techniques for the studies of microbial diversity based on terminal restriction fragment…”
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Reducing the Bias and Uncertainty of Free Energy Estimates by Using Regression to Fit Thermodynamic Integration Data by Shyu, Conrad, Ytreberg, F. Marty

“…This report presents the application of polynomial regression for estimating free energy differences using thermodynamic integration. We employ linear…”
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Accurate Estimation of Solvation Free Energy Using Polynomial Fitting Techniques by Shyu, Conrad, Ytreberg, F. Marty

“…This report details an approach to improve the accuracy and precision of free energy difference estimates using thermodynamic integration data (slope of the…”
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Computational Estimates of Binding Affinities for Estrogen Receptor Isoforms in Rainbow Trout by Shyu, Conrad, Brown, Celeste J, Ytreberg, F. Marty

“…Molecular dynamics simulations were used to determine the binding affinities between between the hormone 17 beta-estradiol (E2) and different estrogen receptor…”
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