Search Results - "Shirsekar, Gautam"

Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe–microbe interaction networks in plant leaves by Regalado, Julian, Lundberg, Derek S., Deusch, Oliver, Kersten, Sonja, Karasov, Talia, Poersch, Karin, Shirsekar, Gautam, Weigel, Detlef

“…Microorganisms from all domains of life establish associations with plants. Although some harm the plant, others antagonize pathogens or prime the plant immune…”
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The E3 Ligase APIP10 Connects the Effector AvrPiz-t to the NLR Receptor Piz-t in Rice by Park, Chan Ho, Shirsekar, Gautam, Bellizzi, Maria, Chen, Songbiao, Songkumarn, Pattavipha, Xie, Xin, Shi, Xuetao, Ning, Yuese, Zhou, Bo, Suttiviriya, Pavinee, Wang, Mo, Umemura, Kenji, Wang, Guo-Liang

“…Although nucleotide-binding domain, leucine-rich repeat (NLR) proteins are the major immune receptors in plants, the mechanism that controls their activation…”
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Atlas of telomeric repeat diversity in Arabidopsis thaliana by Tao, Yueqi, Xian, Wenfei, Bao, Zhigui, Rabanal, Fernando A, Movilli, Andrea, Lanz, Christa, Shirsekar, Gautam, Weigel, Detlef

“…Telomeric repeat arrays at the ends of chromosomes are highly dynamic in composition, but their repetitive nature and technological limitations have made it…”
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Host-associated microbe PCR (hamPCR) enables convenient measurement of both microbial load and community composition by Lundberg, Derek S, Pramoj Na Ayutthaya, Pratchaya, Strauß, Annett, Shirsekar, Gautam, Lo, Wen-Sui, Lahaye, Thomas, Weigel, Detlef

“…The ratio of microbial population size relative to the amount of host tissue, or 'microbial load', is a fundamental metric of colonization and infection, but…”
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The Monocot-Specific Receptor-like Kinase SDS2 Controls Cell Death and Immunity in Rice by Fan, Jiangbo, Bai, Pengfei, Ning, Yuese, Wang, Jiyang, Shi, Xuetao, Xiong, Yehui, Zhang, Kai, He, Feng, Zhang, Chongyang, Wang, Ruyi, Meng, Xiangzong, Zhou, Jinggeng, Wang, Mo, Shirsekar, Gautam, Park, Chan Ho, Bellizzi, Maria, Liu, Wende, Jeon, Jong-Seong, Xia, Ye, Shan, Libo, Wang, Guo-Liang

“…Programmed cell death (PCD) plays critical roles in plant immunity but must be regulated to prevent excessive damage. The E3 ubiquitin ligase SPL11 negatively…”
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Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens by Weiß, Clemens L., Schuenemann, Verena J., Devos, Jane, Shirsekar, Gautam, Reiter, Ella, Gould, Billie A., Stinchcombe, John R., Krause, Johannes, Burbano, Hernán A.

“…Herbaria archive a record of changes of worldwide plant biodiversity harbouring millions of specimens that contain DNA suitable for genome sequencing. To…”
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Quantification of hydrogen peroxide in plant tissues using Amplex Red by Chakraborty, Sourav, Hill, Amy L., Shirsekar, Gautam, Afzal, Ahmed J., Wang, Guo-Liang, Mackey, David, Bonello, Pierluigi

“…[Display omitted] •A reliable H2O2 quantitation method from plant cell lysate using Amplex Red is proposed.•Commonly used extraction additives interfered with…”
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Identification and characterization of suppressor mutants of spl11- mediated cell death in rice by Shirsekar, Gautam S, Vega-Sanchez, Miguel E, Bordeos, Alicia, Baraoidan, Marietta, Swisshelm, Andrew, Fan, Jiangbo, Park, Chan Ho, Leung, Hei, Wang, Guo-Liang

“…Lesion mimic mutants have been used to dissect programmed cell death (PCD) and defense-related pathways in plants. The rice lesion-mimic mutant spl11 exhibits…”
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The U-Box E3 Ligase SPL11/PUB13 Is a Convergence Point of Defense and Flowering Signaling in Plants by Liu, Jinling, Li, Wei, Ning, Yuese, Shirsekar, Gautam, Cai, Yuhui, Wang, Xuli, Dai, Liangying, Wang, Zhilong, Liu, Wende, Wang, Guo-Liang

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OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice by Vo, Kieu T X, Kim, Chi-Yeol, Hoang, Trung V, Lee, Sang-Kyu, Shirsekar, Gautam, Seo, Young-Su, Lee, Sang-Won, Wang, Guo-Liang, Jeon, Jong-Seong

“…WRKY proteins play important roles in transcriptional reprogramming in plants in response to various stresses including pathogen attack. In this study, we…”
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Sources of resistance to Indian pathotypes of Puccinia graminis tritici and P. triticina in durum wheat by Mishra, Akhilesh N., Shirsekar, Gautam S., Yadav, Sitaram, Kaushal, Kamini, Dubey, Vijay G., Sai Prasad, Sakuru V.

“…Stem rust and leaf rust are important diseases affecting durum wheat production in India. Inheritance and extent of diversity in resistance were studied in…”
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vcf2gwas: Python API for comprehensive GWAS analysis using GEMMA by Vogt, Frank, Shirsekar, Gautam, Weigel, Detlef

“…Abstract Motivation Genome-wide association study (GWAS) requires a researcher to perform a multitude of different actions during analysis. From editing and…”
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Role of Ubiquitination in Plant Innate Immunity and Pathogen Virulence by Shirsekar, Gautam, The Ohio State University, Columbus, OH, USA, Dai, Liangying, Hunan Agricultural University, Changsha, Hunan, China, Hu, Yajun, Hunan Agricultural University, Changsha, Hunan, China, Wang, Xuejun, Hunan Agricultural University, Changsha, Hunan, China, Zeng, Lirong, University of Arkansas, Little Rock, AR, USA, Wang, Guo-Liang, The Ohio State University, Columbus, OH, USA

“…Plant diseases are a major constraint for stable crop production in the world. Plants are constantly threatened by different pathogens and have developed an…”
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The Magnaporthe oryzae Effector AvrPiz-t Targets the RING E3 Ubiquitin Ligase APIP6 to Suppress Pathogen-Associated Molecular Pattern—Triggered Immunity in Rice by Park, Chan-Ho, Chen, Songbiao, Shirsekar, Gautam, Zhou, Bo, Khang, Chang Hyun, Songkumarn, Pattavipha, Afzal, Ahmed J., Ning, Yuese, Wang, Ruyi, Bellizzi, Maria, Valent, Barbara, Wang, Guo-Liang

“…Although the functions of a few effector proteins produced by bacterial and oomycete plant pathogens have been elucidated in recent years, information for the…”
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What natural variation can teach us about resistance durability by Karasov, Talia L, Shirsekar, Gautam, Schwab, Rebecca, Weigel, Detlef

“…•Insufficient resistance durability is a problem in agriculture but seemingly less so in wild plants.•Both genetic and spatial complexities in host populations…”
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Cycles of satellite and transposon evolution in Arabidopsis centromeres by Wlodzimierz, Piotr, Rabanal, Fernando A., Burns, Robin, Naish, Matthew, Primetis, Elias, Scott, Alison, Mandáková, Terezie, Gorringe, Nicola, Tock, Andrew J., Holland, Daniel, Fritschi, Katrin, Habring, Anette, Lanz, Christa, Patel, Christie, Schlegel, Theresa, Collenberg, Maximilian, Mielke, Miriam, Nordborg, Magnus, Roux, Fabrice, Shirsekar, Gautam, Alonso-Blanco, Carlos, Lysak, Martin A., Novikova, Polina Y., Bousios, Alexandros, Weigel, Detlef, Henderson, Ian R.

“…Centromeres are critical for cell division, loading CENH3 or CENPA histone variant nucleosomes, directing kinetochore formation and allowing chromosome…”
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Multiple Sources of Introduction of North American Arabidopsis thaliana from across Eurasia by Shirsekar, Gautam, Devos, Jane, Latorre, Sergio M, Blaha, Andreas, Queiroz Dias, Maique, González Hernando, Alba, Lundberg, Derek S, Burbano, Hernán A, Fenster, Charles B, Weigel, Detlef

“…Abstract Large-scale movement of organisms across their habitable range, or migration, is an important evolutionary process that can shape genetic diversity…”
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Role of lysine residues of the Magnaporthe oryzae effector AvrPiz‐t in effector‐ and PAMP‐triggered immunity by Bai, Pengfei, Park, Chan‐Ho, Shirsekar, Gautam, Songkumarn, Pattavipha, Bellizzi, Maria, Wang, Guo‐Liang

“…Summary Magnaporthe oryzae is an important fungal pathogen of both rice and wheat. However, how M. oryzae effectors modulate plant immunity is not fully…”
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Continental-scale associations of Arabidopsis thaliana phyllosphere members with host genotype and drought by Karasov, Talia L., Neumann, Manuela, Leventhal, Laura, Symeonidi, Efthymia, Shirsekar, Gautam, Hawks, Aubrey, Monroe, Grey, Exposito-Alonso, Moisés, Bergelson, Joy, Weigel, Detlef, Schwab, Rebecca

“…Plants are colonized by distinct pathogenic and commensal microbiomes across different regions of the globe, but the factors driving their geographic variation…”
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The U-Box E3 Ligase SPL11/PUB13 Is a Convergence Point of Defense and Flowering Signaling in Plants1 by Liu, Jinling, Li, Wei, Ning, Yuese, Shirsekar, Gautam, Cai, Yuhui, Wang, Xuli, Dai, Liangying, Wang, Zhilong, Liu, Wende, Wang, Guo-Liang

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