Search Results - "Shimodaira, H."

Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference by Shimodaira, H., Hasegawa, M.

“…The maximum-likelihood method for inferring molecular phylogeny (Felsenstein 1981) is being widely used. The probabilistic model for generating the molecular…”
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S-1 and irinotecan plus bevacizumab versus mFOLFOX6 or CapeOX plus bevacizumab as first-line treatment in patients with metastatic colorectal cancer (TRICOLORE): a randomized, open-label, phase III, noninferiority trial by Yamada, Y., Denda, T., Gamoh, M., Iwanaga, I., Yuki, S., Shimodaira, H., Nakamura, M., Yamaguchi, T., Ohori, H., Kobayashi, K., Tsuda, M., Kobayashi, Y., Miyamoto, Y., Kotake, M., Shimada, K., Sato, A., Morita, S., Takahashi, S., Komatsu, Y., Ishioka, C.

“…Combination therapy with oral fluoropyrimidine and irinotecan has not yet been established as first-line treatment of metastatic colorectal cancer (mCRC). We…”
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A shape-from-shading method of polyhedral objects using prior information by Shimodaira, H.

“…We propose a new method for recovering the 3D shape of a polyhedral object from its single 2D image using the shading information contained in the image and…”
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411 DNA methylation profile correlates to the clinical outcomes of anti-EGFR treatment for metastatic colorectal cancer by Ouchi, K, Takahashi, S, Yamada, Y, Tsuji, S, Tatsuno, K, Takahashi, H, Takahashi, N, Takahashi, M, Shimodaira, H, Aburatani, H, Ishioka, C

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Phase I II study of sequential therapy with irinotecan and S-1 for metastatic colorectal cancer by Yoshioka, T, Kato, S, Gamoh, M, Chiba, N, Suzuki, T, Sakayori, N, Kato, S, Shibata, H, Shimodaira, H, Otsuka, K, Kakudo, Y, Takahashi, S, Ishioka, C

“…Background: Both irinotecan (CPT-11) and S-1 are active against colorectal cancer; however, as S-1 is a prodrug of 5-fluorouracil (5-FU), 5-FU and its…”
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Pvclust: an R package for assessing the uncertainty in hierarchical clustering by Suzuki, Ryota, Shimodaira, Hidetoshi

“…Pvclust is an add-on package for a statistical software R to assess the uncertainty in hierarchical cluster analysis. Pvclust can be used easily for general…”
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CONSEL: for assessing the confidence of phylogenetic tree selection by Shimodaira, Hidetoshi, Hasegawa, Masami

“…CONSEL is a program to assess the confidence of the tree selection by giving the p-values for the trees. The main thrust of the program is to calculate the…”
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Approximately Unbiased Tests of Regions Using Multistep-Multiscale Bootstrap Resampling by Shimodaira, Hidetoshi

“…Approximately unbiased tests based on bootstrap probabilities are considered for the exponential family of distributions with unknown expectation parameter…”
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An Approximately Unbiased Test of Phylogenetic Tree Selection by Shimodaira, Hidetoshi, Goldman, Nick

“…An approximately unbiased (AU) test that uses a newly devised multiscale bootstrap technique was developed for general hypothesis testing of regions in an…”
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Consistency of SINE insertion topology and flanking sequence tree: quantifying relationships among cetartiodactyls by Lum, J K, Nikaido, M, Shimamura, M, Shimodaira, H, Shedlock, A M, Okada, N, Hasegawa, M

“…Short interspersed nuclear elements (SINEs) have been used to generate unambiguous phylogenetic topologies relating eukaryotic taxa. The irreversible nature of…”
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Depth of Ultra High Energy Cosmic Ray Induced Air Shower Maxima Measured by the Telescope Array Black Rock and Long Ridge FADC Fluorescence Detectors and Surface Array in Hybrid Mode by Abbasi, R. U., Abe, M., Abu-Zayyad, T., Azuma, R., Blake, S. A., Cady, R., Cheon, B. G., Chiba, J., Chikawa, M., di Matteo, A., Fujii, T., Fujita, K., Furlich, G., Goto, T., Hayashi, M., Hayashi, Y., Hayashida, N., Hibino, K., Honda, K., Ikeda, D., Inoue, N., Ishii, T., Ishimori, R., Ivanov, D., Jeong, S. M., Jui, C. C. H., Kadota, K., Kakimoto, F., Kawai, H., Kawakami, S., Kawana, S., Kawata, K., Kim, J. H., Kim, J. H., Kishigami, S., Kitamura, S., Kuzmin, V., Kuznetsov, M., Lee, K. H., Lubsandorzhiev, B., Machida, K., Matsuyama, T., Matthews, J. N., Mayta, R., Minamino, M., Mukai, K., Myers, I., Nagasawa, K., Nagataki, S., Nakamura, R., Ogio, S., Ogura, J., Ohnishi, M., Ohoka, H., Okuda, T., Omura, Y., Ono, M., Oshima, A., Park, I. H., Pshirkov, M. S., Rodriguez, D. C., Rubtsov, G., Sagawa, H., Sahara, R., Saito, K., Saito, Y., Sakaki, N., Sekino, K., Shibata, F., Shibata, T., Shimodaira, H., Shin, H. S., Sokolsky, P., Stokes, B. T., Stratton, S. R., Suzawa, T., Takahashi, Y., Takamura, M., Takeda, M., Takeishi, R., Taketa, A., Takita, M., Tameda, Y., Tanaka, H., Thomas, S. B., Thomson, G. B., Tinyakov, P., Tokuno, H., Troitsky, S., Tsunesada, Y., Udo, S., Urban, F., Wong, T., Yamamoto, M., Yamane, R., Yamaoka, H., Yamazaki, K., Yang, J., Yashiro, K., Yoshii, H.

“…The Telescope Array (TA) observatory utilizes fluorescence detectors and surface detectors (SDs) to observe air showers produced by ultra high energy cosmic…”
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Improving predictive inference under covariate shift by weighting the log-likelihood function by Shimodaira, Hidetoshi

“…A class of predictive densities is derived by weighting the observed samples in maximizing the log-likelihood function. This approach is effective in cases…”
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Evidence for a Supergalactic Structure of Magnetic Deflection Multiplets of Ultra-high-energy Cosmic Rays by Abbasi, R. U., Abe, M., Abu-Zayyad, T., Allen, M., Azuma, R., Belz, J. W., Blake, S. A., Cheon, B. G., Chiba, J., Chikawa, M., di Matteo, A., Fujii, T., Fujisue, K., Fujita, K., Fukushima, M., Hayashida, N., Hibino, K., Higuchi, R., Honda, K., Ikeda, D., Inadomi, T., Ishii, T., Ito, H., Ivanov, D., Iwakura, H., Jeong, H. M., Jui, C. C. H., Kakimoto, F., Kasahara, K., Kawai, H., Kawakami, S., Kawana, S., Kawata, K., Kido, E., Kim, H. B., Kim, J. H., Kim, J. H., Kim, M. H., Kim, S. W., Kishigami, S., Kwon, Y. J., Lubsandorzhiev, B., Lundquist, J. P., Machida, K., Matsumiya, H., Matsuyama, T., Matthews, J. N., Mayta, R., Mukai, K., Myers, I., Nagataki, S., Nakamura, T., Okuda, T., Omura, Y., Onogi, R., Oshima, A., Ozawa, S., Park, I. H., Remington, J., Rodriguez, D. C., Rubtsov, G., Ryu, D., Sagawa, H., Sahara, R., Saito, Y., Sakaki, N., Sako, T., Sakurai, N., Shah, P. D., Shibata, T., Shimodaira, H., Shin, B. K., Shin, H. S., Smith, J. D., Sone, N., Stokes, B. T., Stroman, T. A., Suzawa, T., Takahashi, Y., Takamura, M., Takeishi, R., Takita, M., Tameda, Y., Tanaka, K., Tanaka, M., Tanoue, Y., Tokuno, H., Tomida, T., Troitsky, S., Tsunesada, Y., Uchihori, Y., Udo, S., Urban, F., Yada, K., Yamamoto, M., Yamazaki, K., Yang, J., Yashiro, K., Yosei, M., Zundel, Z.

“…Evidence for a large-scale supergalactic cosmic-ray multiplet (arrival directions correlated with energy) structure is reported for ultra-high-energy…”
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Pen pressure features for writer-independent on-line handwriting recognition based on substroke HMM by Nakai, M., Sudo, T., Shimodaira, H., Sagayama, S.

“…Discusses the use of pen pressure as a feature in writer-independent on-line handwriting recognition. We propose two kinds of features related to pen pressure:…”
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First High‐Speed Video Camera Observations of a Lightning Flash Associated With a Downward Terrestrial Gamma‐Ray Flash by Abbasi, R. U., Saba, M. M. F., Belz, J. W., Krehbiel, P. R., Kieu, N., Stanley, M. A., Mazich, J., LeVon, R., Smout, K., Petrizze, A., Abu‐Zayyad, T., Allen, M., Arimura, R., Bergman, D. R., Blake, S. A., Buckland, I., Cheon, B. G., Chikawa, M., Fujisue, K., Fujita, K., Fujiwara, R., Fukushima, M., Furlich, G., Hayashida, N., He, H., Hibino, K., Honda, K., Ikeda, D., Inoue, N., Ito, H., Iwasaki, A., Jeong, H. M., Jui, C. C. H., Kadota, K., Kakimoto, F., Kalashev, O., Kasami, S., Kawata, K., Kharuk, I., Kim, J. H., Kim, J. H., Kim, S. W., Kimura, Y., Komae, I., Kubota, Y., Kwon, Y. J., Lee, K. H., Lubsandorzhiev, B., Matthews, J. N., Mayta, R., Myers, I., Nagataki, S., Nakai, K., Nakamura, R., Nakamura, T., Nakazawa, A., Nonaka, T., Ogio, S., Ohoka, H., Oku, Y., Okuda, T., Omura, Y., Ono, M., Oshima, A., Park, I. H., Potts, M., Rodriguez, D. C., Rott, C., Sagawa, H., Sakaki, N., Sakurai, N., Sato, K., Shibasaki, Y., Shibata, T., Shikita, J., Shimodaira, H., Shinto, D., Stokes, B. T., Stroman, T. A., Takahashi, K., Takamura, M., Takeda, M., Takeishi, R., Tameda, Y., Tanaka, K., Tanaka, M., Thomas, S. B., Thomson, G. B., Tinyakov, P., Tkachev, I., Tomida, T., Troitsky, S., Tsunesada, Y., Uehama, T., Warren, D., Wong, T., Yashiro, K., Yoshida, F., Zhezher, Y., Zundel, Z.

“…In this paper, we present the first high‐speed video observation of a cloud‐to‐ground lightning flash and its associated downward‐directed Terrestrial…”
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A diversity-control-oriented genetic algorithm (DCGA): performance in function optimization by Shimodaira, H.

“…In genetic algorithms, in order to attain the global optimum without getting stuck at a local optimum, an appropriate diversity of structures in the population…”
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Context-dependent substroke model for HMM-based on-line handwriting recognition by Tokuno, J., Inami, N., Matsuda, S., Nakai, M., Shimodaira, H., Sagayama, S.

“…Describes context-dependent substroke hidden Markov models (HMMs)for on-line handwritten recognition of cursive Kanji and Hiragana characters. In order to…”
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DEVELOPMENT AND DISTRIBUTION OF THE JAPANESE EDITION OF SIOG EDUCATIONAL MATERIALS by Matsuoka, A., Tsubata, Y., Mizutani, T., Takahashi, M., Shimodaira, H., Hamamoto, Y., Nagashima, F., Ando, Y.

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P148 - DEVELOPMENT AND DISTRIBUTION OF THE JAPANESE EDITION OF SIOG EDUCATIONAL MATERIALS by Matsuoka, A., Tsubata, Y., Mizutani, T., Takahashi, M., Shimodaira, H., Hamamoto, Y., Nagashima, F., Ando, Y.

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Human-computer dialogue simulation using hidden Markov models by Cuayahuitl, H., Renals, S., Lemon, O., Shimodaira, H.

“…This paper presents a probabilistic method to simulate task-oriented human-computer dialogues at the intention level, that may be used to improve or to…”
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