Search Results - "Shi, Shengjing"

A synthetic microbial community used as a bioinoculant can overcome rice production constraints in acid soils by O’Callaghan, Maureen, Shi, Shengjing

“…A customised synthetic microbial community (SynCom) composed of carefully selected rhizosphere-competent bacterial strains improved rice growth, yield and…”
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Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly by Zhalnina, Kateryna, Louie, Katherine B., Hao, Zhao, Mansoori, Nasim, da Rocha, Ulisses Nunes, Shi, Shengjing, Cho, Heejung, Karaoz, Ulas, Loqué, Dominique, Bowen, Benjamin P., Firestone, Mary K., Northen, Trent R., Brodie, Eoin L.

“…Like all higher organisms, plants have evolved in the context of a microbial world, shaping both their evolution and their contemporary ecology. Interactions…”
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Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons by Shi, Shengjing, Nuccio, Erin, Herman, Donald J, Rijkers, Ruud, Estera, Katerina, Li, Jiabao, da Rocha, Ulisses Nunes, He, Zhili, Pett-Ridge, Jennifer, Brodie, Eoin L, Zhou, Jizhong, Firestone, Mary

“…It is well known that rhizosphere microbiomes differ from those of surrounding soil, and yet we know little about how these root-associated microbial…”
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Probing Biological Nitrogen Fixation in Legumes Using Raman Spectroscopy by Jafari, Abdolabbas, Seth, Kritarth, Werner, Armin, Shi, Shengjing, Hofmann, Rainer, Hoyos-Villegas, Valerio

“…Biological nitrogen fixation (BNF) by symbiotic bacteria plays a vital role in sustainable agriculture. However, current quantification methods are often…”
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Fungal-Bacterial Cooccurrence Patterns Differ between Arbuscular Mycorrhizal Fungi and Nonmycorrhizal Fungi across Soil Niches by Yuan, Mengting Maggie, Kakouridis, Anne, Starr, Evan, Nguyen, Nhu, Shi, Shengjing, Pett-Ridge, Jennifer, Nuccio, Erin, Zhou, Jizhong, Firestone, Mary

“…Soil bacteria and fungi are known to form niche-specific communities that differ between actively growing and decaying roots. Yet almost nothing is known about…”
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Effects of selected root exudate components on soil bacterial communities by Shi, Shengjing, Richardson, Alan E., O'Callaghan, Maureen, DeAngelis, Kristen M., Jones, Eirian E., Stewart, Alison, Firestone, Mary K., Condron, Leo M.

“…Abstract Low-molecular-weight organic compounds in root exudates play a key role in plant–microorganism interactions by influencing the structure and function…”
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Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon by Starr, Evan P, Shi, Shengjing, Blazewicz, Steven J, Probst, Alexander J, Herman, Donald J, Firestone, Mary K, Banfield, Jillian F

“…The transformation of plant photosynthate into soil organic carbon and its recycling to CO by soil microorganisms is one of the central components of the…”
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Stable-Isotope-Informed, Genome-Resolved Metagenomics Uncovers Potential Cross-Kingdom Interactions in Rhizosphere Soil by Starr, Evan P, Shi, Shengjing, Blazewicz, Steven J, Koch, Benjamin J, Probst, Alexander J, Hungate, Bruce A, Pett-Ridge, Jennifer, Firestone, Mary K, Banfield, Jillian F

“…The functioning, health, and productivity of soil are intimately tied to a complex network of interactions, particularly in plant root-associated rhizosphere…”
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Microbial functional genes commonly respond to elevated carbon dioxide by He, Zhili, Deng, Ye, Xu, Meiying, Li, Juan, Liang, Junyi, Xiong, Jinbo, Yu, Hao, Wu, Bo, Wu, Liyou, Xue, Kai, Shi, Shengjing, Carrillo, Yolima, Van Nostrand, Joy D., Hobbie, Sarah E., Reich, Peter B., Schadt, Christopher W., Kent, Angela D., Pendall, Elise, Wallenstein, Matthew, Luo, Yiqi, Yan, Qingyun, Zhou, Jizhong

“…•Identifying common responses of microbial functional genes to elevated CO2 (eCO2)•Nitrogen (N) fixation, carbon fixation and decomposition genes increased…”
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Evaluation of 16S rRNA gene primer pairs for bacterial community profiling in an across soil and ryegrass plant study by Shi, Shengjing, Kumar, Sandeep, Young, Sandra, Maclean, Paul, Jauregui, Ruy

“…Introduction As microbes play important roles in many hosts and niches, linking microbiota across niches is becoming an important area of research. Studying…”
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3D-printed biological habitats for the protection and persistence of Rhizobia species in compacted soils by Laurenson, Seth, Villamizar, Laura, Lasseur, Remy, Fitzgerald, Rhys, Shi, Shengjing

“…Microorganisms in soils are responsible for many ecosystem services. However, in degraded soils microbial abundance and function are limited which compromises…”
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Sustainable Management of Medicago sativa for Future Climates: Insect Pests, Endophytes and Multitrophic Interactions in a Complex Environment by McNeill, Mark R., Tu, Xiongbing, Altermann, Eric, Beilei, Wu, Shi, Shengjing

“…Medicago sativa L. (alfalfa, syn. lucerne) is an important forage crop for livestock, which is subject to attack from a range of insect pests and susceptible…”
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In situ sampling of low molecular weight organic anions from rhizosphere of radiata pine ( Pinus radiata) grown in a rhizotron system by Shi, Shengjing, Condron, Leo, Larsen, Stuart, Richardson, Alan E., Jones, Eirian, Jiao, Joy, O’Callaghan, Maureen, Stewart, Alison

“…▶ Anion exchange membrane can collect organic anions from plant rhizosphere in situ. ▶ Large-scale rhizotron can be used for the study of rhizosphere processes…”
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Investigation of organic anions in tree root exudates and rhizosphere microbial communities using in situ and destructive sampling techniques by Shi, Shengjing, O'Callaghan, Maureen, Jones, E. Eirian, Richardson, Alan E., Walter, Christian, Stewart, Alison, Condron, Leo

“…Purpose Understanding of the role of low molecular weight organic anions (OAs) in structuring rhizosphere microbial communities in situ is limited due to…”
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Impacts of soil‐borne disease on plant yield and farm profit in dairying soils by Dignam, Bryony E. A., Marshall, Sean D. G., Wall, Andrew J., Mtandavari, Yeukai F., Gerard, Emily M., Hicks, Emily, Cameron, Catherine, Aalders, Lee T., Shi, Shengjing, Bell, Nigel L.

“…Introduction Globally, soil‐borne plant pathogens are a significant contributor to plant yield loss in agricultural systems, including pasture production. The…”
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Changes to the structure of Sphingomonas spp. communities associated with biodegradation of the herbicide isoproturon in soil by Shi, Shengjing, Bending, Gary D

“…The phenyl-urea herbicide isoproturon is a major contaminant of surface and ground-water in agricultural catchments. Earlier work suggested that within-field…”
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The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages by Shi, Shengjing, Nuccio, Erin E., Shi, Zhou J., He, Zhili, Zhou, Jizhong, Firestone, Mary K.

“…While interactions between roots and microorganisms have been intensively studied, we know little about interactions among root‐associated microbes. We used…”
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Plant roots alter microbial functional genes supporting root litter decomposition by Shi, Shengjing, Herman, Donald J., He, Zhili, Pett-Ridge, Jennifer, Wu, Liyou, Zhou, Jizhong, Firestone, Mary K.

“…Decomposition of soil organic carbon is central to the global carbon cycle and profoundly affected by plant roots. While root “priming” of decomposition has…”
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Soil ecosystem multifunctionality is strongly linked with crop yield after four decades chemical fertilization in black soil by Deng, Huiyu, Ma, Xingzhu, Liu, Zikai, Hu, Hangwei, Di, Hong J., Liu, Yanji, Shi, Shengjing, Hao, Xiaoyu, Zhao, Yue, He, Ji-Zheng, Shen, Jupei

“…Soil ecosystem multifunctionality (EMF), the ability of an ecosystem to perform multiple functions, remains uncertain in its contribution to crop production,…”
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Elevated CO2 shifts the functional structure and metabolic potentials of soil microbial communities in a C4 agroecosystem by Xiong, Jinbo, He, Zhili, Shi, Shengjing, Kent, Angela, Deng, Ye, Wu, Liyou, Van Nostrand, Joy D., Zhou, Jizhong

“…Atmospheric CO 2 concentration is continuously increasing and previous studies have shown that elevated CO 2 (eCO 2 ) significantly impacts C 3 plants and…”
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