Search Results - "Sherman, Brad T."

DAVID: a web server for functional enrichment analysis and functional annotation of gene lists (2021 update) by Sherman, Brad T, Hao, Ming, Qiu, Ju, Jiao, Xiaoli, Baseler, Michael W, Lane, H Clifford, Imamichi, Tomozumi, Chang, Weizhong

“…Abstract DAVID is a popular bioinformatics resource system including a web server and web service for functional annotation and enrichment analyses of gene…”
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Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists by Huang, Da Wei, Sherman, Brad T, Lempicki, Richard A

“…Functional analysis of large gene lists, derived in most cases from emerging high-throughput genomic, proteomic and bioinformatics scanning approaches, is…”
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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources by Huang, Da Wei, Lempicki, Richard A, Sherman, Brad T

“…DAVID bioinformatics resources consists of an integrated biological knowledgebase and analytic tools aimed at systematically extracting biological meaning from…”
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Defective HIV-1 proviruses produce viral proteins by Imamichi, Hiromi, Smith, Mindy, Adelsberger, Joseph W., Izumi, Taisuke, Scrimieri, Francesca, Sherman, Brad T., Rehm, Catherine A., Imamichi, Tomozumi, Pau, Alice, Catalfamo, Marta, Fauci, Anthony S., Lane, H. Clifford

“…HIV-1 proviruses persist in the CD4⁺ T cells of HIV-infected individuals despite years of combination antiretroviral therapy (cART) with suppression of HIV-1…”
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DAVID-WS: a stateful web service to facilitate gene/protein list analysis by XIAOLI JIAO, SHERMAN, Brad T, DA WEI HUANG, STEPHENS, Robert, BASELER, Michael W, CLIFFORD LANE, H, LEMPICKI, Richard A

“…The database for annotation, visualization and integrated discovery (DAVID), which can be freely accessed at http://david.abcc.ncifcrf.gov/, is a web-based…”
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The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists by Huang, Da Wei, Sherman, Brad T, Tan, Qina, Collins, Jack R, Alvord, W Gregory, Roayaei, Jean, Stephens, Robert, Baseler, Michael W, Lane, H Clifford, Lempicki, Richard A

“…The DAVID Gene Functional Classification Tool http://david.abcc.ncifcrf.gov uses a novel agglomeration algorithm to condense a list of genes or associated…”
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DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists by Huang, Da Wei, Sherman, Brad T, Tan, Qina, Kir, Joseph, Liu, David, Bryant, David, Guo, Yongjian, Stephens, Robert, Baseler, Michael W, Lane, H. Clifford, Lempicki, Richard A

“…All tools in the DAVID Bioinformatics Resources aim to provide functional interpretation of large lists of genes derived from genomic studies. The newly…”
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DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis by Sherman, Brad T, Huang, Da Wei, Tan, Qina, Guo, Yongjian, Bour, Stephan, Liu, David, Stephens, Robert, Baseler, Michael W, Lane, H Clifford, Lempicki, Richard A

“…Due to the complex and distributed nature of biological research, our current biological knowledge is spread over many redundant annotation databases…”
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Discovery of a Novel Intron in US10/US11/US12 of HSV-1 Strain 17 by Chang, Weizhong, Hao, Ming, Qiu, Ju, Sherman, Brad T, Imamichi, Tomozumi

“…Herpes Simplex Virus type 1 (HSV-1) infects humans and causes a variety of clinical manifestations. Many HSV-1 genomes have been sequenced with high-throughput…”
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DAVID: Database for Annotation, Visualization, and Integrated Discovery by Dennis, Glynn, Sherman, Brad T, Hosack, Douglas A, Yang, Jun, Gao, Wei, Lane, H Clifford, Lempicki, Richard A

“…The distributed nature of biological knowledge poses a major challenge to the interpretation of genome-scale datasets, including those derived from microarray…”
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MicroRNA Profiles in Monocyte-Derived Macrophages Generated by Interleukin-27 and Human Serum: Identification of a Novel HIV-Inhibiting and Autophagy-Inducing MicroRNA by Imamichi, Tomozumi, Goswami, Suranjana, Hu, Xiaojun, Laverdure, Sylvain, Yang, Jun, Qiu, Ju, Chen, Qian, Sherman, Brad T, Chang, Weizhong

“…Interleukin-27 (IL-27) is a pleiotropic cytokine that influences the innate and adaptive immune systems. It inhibits viral infection and regulates the…”
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Correction: Hu et al. Profiles of Long Non-Coding RNAs and mRNA Expression in Human Macrophages Regulated by Interleukin-27. Int. J. Mol. Sci. 2019, 20, 6207 by Hu, Xiaojun, Goswami, Suranjana, Qiu, Ju, Chen, Qian, Laverdure, Sylvain, Sherman, Brad T., Imamichi, Tomozumi

“…The authors wish to make the following corrections to this paper [...]…”
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Interleukin-15 (IL-15) Strongly Correlates with Increasing HIV-1 Viremia and Markers of Inflammation by Swaminathan, Sanjay, Qiu, Ju, Rupert, Adam W, Hu, Zonghui, Higgins, Jeanette, Dewar, Robin L, Stevens, Randy, Rehm, Catherine A, Metcalf, Julia A, Sherman, Brad T, Baseler, Michael W, Lane, H Clifford, Imamichi, Tomozumi

“…IL-15 has been postulated to play an important role in HIV-1 infection, yet there are conflicting reports regarding its expression levels in these patients. We…”
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Complete Genome Sequence of Herpes Simplex Virus 2 Strain G by Chang, Weizhong, Jiao, Xiaoli, Sui, Hongyan, Goswami, Suranjana, Sherman, Brad T, Fromont, Caroline, Caravaca, Juan Manuel, Tran, Bao, Imamichi, Tomozumi

“…Herpes simplex virus type (HSV-2) is a common causative agent of genital tract infections. Moreover, HSV-2 and HIV infection can mutually increase the risk of…”
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The association between single-nucleotide polymorphisms within type 1 interferon pathway genes and human immunodeficiency virus type 1 viral load in antiretroviral-naïve participants by Mørup, Sara Bohnstedt, Leung, Preston, Reilly, Cavan, Sherman, Brad T, Chang, Weizhong, Milojevic, Maja, Milinkovic, Ana, Liappis, Angelike, Borgwardt, Line, Petoumenos, Kathy, Paredes, Roger, Mistry, Shweta S, MacPherson, Cameron R, Lundgren, Jens, Helleberg, Marie, Reekie, Joanne, Murray, Daniel D

“…Human genetic contribution to HIV progression remains inadequately explained. The type 1 interferon (IFN) pathway is important for host control of HIV and…”
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A Combination of M50I and V151I Polymorphic Mutations in HIV-1 Subtype B Integrase Results in Defects in Autoprocessing by Yang, Jun, Hao, Ming, Khan, Muhammad A, Rehman, Muhammad T, Highbarger, Helene C, Chen, Qian, Goswami, Suranjana, Sherman, Brad T, Rehm, Catherine A, Dewar, Robin L, Chang, Weizhong, Imamichi, Tomozumi

“…We have recently reported that a recombinant HIV-1NL4.3 containing Met-to-Ile change at codon 50 of integrase (IN) (IN:M50I) exhibits suppression of the virus…”
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Gene duplications in prokaryotes can be associated with environmental adaptation by Bratlie, Marit S, Johansen, Jostein, Sherman, Brad T, Huang, Da Wei, Lempicki, Richard A, Drabløs, Finn

“…Gene duplication is a normal evolutionary process. If there is no selective advantage in keeping the duplicated gene, it is usually reduced to a pseudogene and…”
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STING is an essential mediator of the Ku70-mediated production of IFN-λ1 in response to exogenous DNA by Sui, Hongyan, Zhou, Ming, Imamichi, Hiromi, Jiao, Xiaoli, Sherman, Brad T, Lane, H Clifford, Imamichi, Tomozumi

“…We previously identified Ku70, a subunit of a DNA repair protein complex, as a cytosolic DNA sensor that induces the production of interferon-λ1 (IFN-λ1) by…”
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DAVID: Database for Annotation, Visualization, and Integrated Discovery by Dennis, Jr, Glynn, Sherman, Brad T, Hosack, Douglas A, Yang, Jun, Gao, Wei, Lane, H Clifford, Lempicki, Richard A

“…Functional annotation of differentially expressed genes is a necessary and critical step in the analysis of microarray data. The distributed nature of…”
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DAVID Ortholog: an integrative tool to enhance functional analysis through orthologs by Sherman, Brad T, Panzade, Ganesh, Imamichi, Tomozumi, Chang, Weizhong

“…Abstract Motivation The Database for Annotation, Visualization, and Integrated Discovery (DAVID) is a web-based bioinformatics system for the functional…”
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