Search Results - "Sheridan, Paul O."

The influence of diet on the gut microbiota by Scott, Karen P., Gratz, Silvia W., Sheridan, Paul O., Flint, Harry J., Duncan, Sylvia H.

“…Diet is a major factor driving the composition and metabolism of the colonic microbiota. The amount, type and balance of the main dietary macronutrients…”
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Polysaccharide utilization loci and nutritional specialization in a dominant group of butyrate-producing human colonic Firmicutes by O Sheridan, Paul, Martin, Jennifer C, Lawley, Trevor D, Browne, Hilary P, Harris, Hugh M B, Bernalier-Donadille, Annick, Duncan, Sylvia H, O'Toole, Paul W, P Scott, Karen, J Flint, Harry

“…and are the predominant bacterial phyla colonizing the healthy human large intestine. Whilst both ferment dietary fibre, genes responsible for this important…”
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Recovery of Lutacidiplasmatales archaeal order genomes suggests convergent evolution in Thermoplasmatota by Sheridan, Paul O., Meng, Yiyu, Williams, Tom A., Gubry-Rangin, Cécile

“…The Terrestrial Miscellaneous Euryarchaeota Group has been identified in various environments, and the single genome investigated thus far suggests that these…”
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Genomics of soil depth niche partitioning in the Thaumarchaeota family Gagatemarchaeaceae by Sheridan, Paul O., Meng, Yiyu, Williams, Tom A., Gubry-Rangin, Cécile

“…Knowledge of deeply-rooted non-ammonia oxidising Thaumarchaeota lineages from terrestrial environments is scarce, despite their abundance in acidic soils…”
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Gene duplication drives genome expansion in a major lineage of Thaumarchaeota by Sheridan, Paul O., Raguideau, Sebastien, Quince, Christopher, Holden, Jennifer, Zhang, Lihong, Williams, Tom A., Gubry-Rangin, Cécile

“…Ammonia-oxidising archaea of the phylum Thaumarchaeota are important organisms in the nitrogen cycle, but the mechanisms driving their radiation into diverse…”
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Sporulation capability and amylosome conservation among diverse human colonic and rumen isolates of the keystone starch‐degrader Ruminococcus bromii by Mukhopadhya, Indrani, Moraïs, Sarah, Laverde‐Gomez, Jenny, Sheridan, Paul O., Walker, Alan W., Kelly, William, Klieve, Athol V., Ouwerkerk, Diane, Duncan, Sylvia H., Louis, Petra, Koropatkin, Nicole, Cockburn, Darrell, Kibler, Ryan, Cooper, Philip J., Sandoval, Carlos, Crost, Emmanuelle, Juge, Nathalie, Bayer, Edward A., Flint, Harry J.

“…Summary Ruminococcus bromii is a dominant member of the human colonic microbiota that plays a ‘keystone’ role in degrading dietary resistant starch. Recent…”
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Pro-inflammatory flagellin proteins of prevalent motile commensal bacteria are variably abundant in the intestinal microbiome of elderly humans by Neville, B Anne, Sheridan, Paul O, Harris, Hugh M B, Coughlan, Simone, Flint, Harry J, Duncan, Sylvia H, Jeffery, Ian B, Claesson, Marcus J, Ross, R Paul, Scott, Karen P, O'Toole, Paul W

“…Some Eubacterium and Roseburia species are among the most prevalent motile bacteria present in the intestinal microbiota of healthy adults. These flagellate…”
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Impact of carbohydrate substrate complexity on the diversity of the human colonic microbiota by Chung, Wing Sun Faith, Walker, Alan W, Vermeiren, Joan, Sheridan, Paul O, Bosscher, Douwina, Garcia-Campayo, Vicenta, Parkhill, Julian, Flint, Harry J, Duncan, Sylvia H

“…Abstract The diversity of the colonic microbial community has been linked with health in adults and diet composition is one possible determinant of diversity…”
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Unique Organization of Extracellular Amylases into Amylosomes in the Resistant Starch-Utilizing Human Colonic Firmicutes Bacterium Ruminococcus bromii by Ze, Xiaolei, Ben David, Yonit, Laverde-Gomez, Jenny A, Dassa, Bareket, Sheridan, Paul O, Duncan, Sylvia H, Louis, Petra, Henrissat, Bernard, Juge, Nathalie, Koropatkin, Nicole M, Bayer, Edward A, Flint, Harry J

“…Ruminococcus bromii is a dominant member of the human gut microbiota that plays a key role in releasing energy from dietary starches that escape digestion by…”
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Phylogenetic reconciliation: making the most of genomes to understand microbial ecology and evolution by Williams, Tom A, Davin, Adrian A, Szánthó, Lénárd L, Stamatakis, Alexandros, Wahl, Noah A, Woodcroft, Ben J, Soo, Rochelle M, Eme, Laura, Sheridan, Paul O, Gubry-Rangin, Cecile, Spang, Anja, Hugenholtz, Philip, Szöllősi, Gergely J

“…In recent years, phylogenetic reconciliation has emerged as a promising approach for studying microbial ecology and evolution. The core idea is to model how…”
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Rooting Species Trees Using Gene Tree-Species Tree Reconciliation by Harris, Brogan J, Sheridan, Paul O, Davín, Adrián A, Gubry-Rangin, Cécile, Szöllősi, Gergely J, Williams, Tom A

“…Interpreting phylogenetic trees requires a root, which provides the direction of evolution and polarizes ancestor-descendant relationships. But inferring the…”
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Distribution, organization and expression of genes concerned with anaerobic lactate utilization in human intestinal bacteria by Sheridan, Paul O, Louis, Petra, Tsompanidou, Eleni, Shaw, Sophie, Harmsen, Hermie J, Duncan, Sylvia H, Flint, Harry J, Walker, Alan W

“…Lactate accumulation in the human gut is linked to a range of deleterious health impacts. However, lactate is consumed and converted to the beneficial…”
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Heterologous gene expression in the human gut bacteria Eubacterium rectale and Roseburia inulinivorans by means of conjugative plasmids by Sheridan, Paul O., Martin, Jennifer C., Minton, Nigel P., Flint, Harry J., O'Toole, Paul W., Scott, Karen P.

“…Commensal butyrate-producing bacteria in the Firmicutes phylum are abundant in the human intestine and are important for maintaining health. However,…”
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Establishing genetic manipulation for novel strains of human gut bacteria by Sheridan, Paul O, Odat, Ma'en Al, Scott, Karen P

“…Recent years have seen the development of high-accuracy and high-throughput genetic manipulation techniques, which have greatly improved our understanding of…”
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Objections to the proposed reclassification of Eubacterium rectale as Agathobacter rectalis by Sheridan, Paul O, Duncan, Sylvia H, Walker, Alan W, Scott, Karen P, Louis, Petra, Flint, Harry J

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Can prebiotics and probiotics improve therapeutic outcomes for undernourished individuals? by Sheridan, Paul O, Bindels, Laure B, Saulnier, Delphine M, Reid, Gregor, Nova, Esther, Holmgren, Kerstin, O'Toole, Paul W, Bunn, James, Delzenne, Nathalie, Scott, Karen P

“…It has become clear in recent years that the human intestinal microbiota plays an important role in maintaining health and thus is an attractive target for…”
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Comparative Genomics of Ruminococcus Bromii, A Keystone Species for the Degradation of Resistant Starch in the Human Colon, Reveals Conservation of Amylosome Organisation by Mukhopadhya, Indrani, Sheridan, Paul O, Laverde-Gomez, Jenny, Duncan, Sylvia H, Kelly, William, Klieve, Athol, Koropatkin, Nicole, Morais, Sarah, Crost, Emmanuelle, Walker, Alan W, Bayer, Edward A, Juge, Nathalie, Flint, Harry J

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Conjugation Protocol Optimised for Roseburia inulinivorans and Eubacterium rectale by Sheridan, Paul O, Martin, Jennifer C, Scott, Karen P

“…and species of the human gut microbiota play an important role in the maintaince of human health, partly by producing butyrate, the main energy source of our…”
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Bacterial population-level trade-offs between drought tolerance and resource acquisition traits impact decomposition by Malik, Ashish A, Martiny, Jennifer B H, Ribeiro, Antonio, Sheridan, Paul O, Weihe, Claudia, Brodie, Eoin L, Allison, Steven D

“…Abstract Microbes drive fundamental ecosystem processes, such as decomposition. Environmental stressors are known to affect microbes, their fitness, and the…”
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120e - Comparative Genomics of Ruminococcus Bromii, A Keystone Species for the Degradation of Resistant Starch in the Human Colon, Reveals Conservation of Amylosome Organisation by Mukhopadhya, Indrani, Sheridan, Paul O., Laverde-Gomez, Jenny, Duncan, Sylvia H., Kelly, William, Klieve, Athol, Koropatkin, Nicole, Morais, Sarah, Crost, Emmanuelle, Walker, Alan W., Bayer, Edward A., Juge, Nathalie, Flint, Harry J.

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