Search Results - "Shave, Steven"

PuLSE: Quality control and quantification of peptide sequences explored by phage display libraries by Shave, Steven, Mann, Stefan, Koszela, Joanna, Kerr, Alastair, Auer, Manfred

“…The design of highly diverse phage display libraries is based on assumption that DNA bases are incorporated at similar rates within the randomized sequence. As…”
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Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRASG13D by Kennedy, Susan A., Jarboui, Mohamed-Ali, Srihari, Sriganesh, Raso, Cinzia, Bryan, Kenneth, Dernayka, Layal, Charitou, Theodosia, Bernal-Llinares, Manuel, Herrera-Montavez, Carlos, Krstic, Aleksandar, Matallanas, David, Kotlyar, Max, Jurisica, Igor, Curak, Jasna, Wong, Victoria, Stagljar, Igor, LeBihan, Thierry, Imrie, Lisa, Pillai, Priyanka, Lynn, Miriam A., Fasterius, Erik, Al-Khalili Szigyarto, Cristina, Breen, James, Kiel, Christina, Serrano, Luis, Rauch, Nora, Rukhlenko, Oleksii, Kholodenko, Boris N., Iglesias-Martinez, Luis F., Ryan, Colm J., Pilkington, Ruth, Cammareri, Patrizia, Sansom, Owen, Shave, Steven, Auer, Manfred, Horn, Nicola, Klose, Franziska, Ueffing, Marius, Boldt, Karsten, Lynn, David J., Kolch, Walter

“…Protein-protein-interaction networks (PPINs) organize fundamental biological processes, but how oncogenic mutations impact these interactions and their…”
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Evolution and impact of high content imaging by Way, Gregory P, Sailem, Heba, Shave, Steven, Kasprowicz, Richard, Carragher, Neil O

“…The field of high content imaging has steadily evolved and expanded substantially across many industry and academic research institutions since it was first…”
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Real-time tracking of complex ubiquitination cascades using a fluorescent confocal on-bead assay by Koszela, Joanna, Pham, Nhan T, Evans, David, Mann, Stefan, Perez-Pi, Irene, Shave, Steven, Ceccarelli, Derek F J, Sicheri, Frank, Tyers, Mike, Auer, Manfred

“…The ubiquitin-proteasome system (UPS) controls the stability, localization and/or activity of the proteome. However, the identification and characterization of…”
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UFSRAT: Ultra-fast Shape Recognition with Atom Types--the discovery of novel bioactive small molecular scaffolds for FKBP12 and 11βHSD1 by Shave, Steven, Blackburn, Elizabeth A, Adie, Jillian, Houston, Douglas R, Auer, Manfred, Webster, Scott P, Taylor, Paul, Walkinshaw, Malcolm D

“…Using molecular similarity to discover bioactive small molecules with novel chemical scaffolds can be computationally demanding. We describe Ultra-fast Shape…”
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Quantitative Microdialysis: Experimental Protocol and Software for Small Molecule Protein Affinity Determination and for Exclusion of Compounds with Poor Physicochemical Properties by Shave, Steven, Pham, Nhan T, Smieja, Connor B, Auer, Manfred

“…Quantitative microdialysis is a traditional biophysical affinity determination technique. In the development of the detailed experimental protocol presented,…”
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EDULISS: a small-molecule database with data-mining and pharmacophore searching capabilities by Hsin, Kun-Yi, Morgan, Hugh P, Shave, Steven R, Hinton, Andrew C, Taylor, Paul, Walkinshaw, Malcolm D

“…We present the relational database EDULISS (EDinburgh University Ligand Selection System), which stores structural, physicochemical and pharmacophoric…”
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Diclofenac Identified as a Kynurenine 3‑Monooxygenase Binder and Inhibitor by Molecular Similarity Techniques by Shave, Steven, McGuire, Kris, Pham, Nhan T, Mole, Damian J, Webster, Scott P, Auer, Manfred

“…In this study, we apply a battery of molecular similarity techniques to known inhibitors of kynurenine 3-monooxygenase (KMO), querying each against a…”
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High-Throughput Chemical Screening for Antivirulence Developmental Phenotypes in Trypanosoma brucei by MacGregor, Paula, Ivens, Alasdair, Shave, Steven, Collie, Iain, Gray, David, Auer, Manfred, Matthews, Keith R

“…OA  Classifications Services EC Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Discovery of a new class of inhibitors for the protein arginine deiminase type 4 (PAD4) by structure-based virtual screening by Teo, Chian Ying, Shave, Steven, Chor, Adam Leow Thean, Salleh, Abu Bakar, Rahman, Mohd Basyaruddin Bin Abdul, Walkinshaw, Malcolm D, Tejo, Bimo A

“…Rheumatoid arthritis (RA) is an autoimmune disease with unknown etiology. Anticitrullinated protein autoantibody has been documented as a highly specific…”
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CLAffinity: A Software Tool for Identification of Optimum Ligand Affinity for Competition-Based Primary Screens by Shave, Steven, Pham, Nhan T., Auer, Manfred

“…A simplistic assumption in setting up a competition assay is that a low affinity labeled ligand can be more easily displaced from a target protein than a high…”
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PyBindingCurve, Simulation, and Curve Fitting to Complex Binding Systems at Equilibrium by Shave, Steven, Chen, Yan-Kai, Pham, Nhan T, Auer, Manfred

“…Understanding multicomponent binding interactions in protein–ligand, protein–protein, and competition systems is essential for fundamental biology and drug…”
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CSBB-ConeExclusion, Adapting Structure Based Solution Virtual Screening to Libraries on Solid Support by Shave, Steven, Auer, Manfred

“…Combinatorial chemical libraries produced on solid support offer fast and cost-effective access to a large number of unique compounds. If such libraries are…”
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Revealing the Indispensable Role of the RFamide Functionality using a Novel Acid Labile Benzofuranone based Amine (ALBA) Linker by Mudd, Gemma, Hendrikse, Megan, Shave, Steven, Houston, Douglas R, Millar, Robert P, Auer, Manfred

“…The RFamide family of peptides represents an important class of GPCR ligand neuropeptides covering a wide range of biological functions. While many analogues…”
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Phenonaut: multiomics data integration for phenotypic space exploration by Shave, Steven, Dawson, John C, Athar, Abdullah M, Nguyen, Cuong Q, Kasprowicz, Richard, Carragher, Neil O

“…Abstract Summary Data integration workflows for multiomics data take many forms across academia and industry. Efforts with limited resources often encountered…”
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From intuition to AI: evolution of small molecule representations in drug discovery by McGibbon, Miles, Shave, Steven, Dong, Jie, Gao, Yumiao, Houston, Douglas R, Xie, Jiancong, Yang, Yuedong, Schwaller, Philippe, Blay, Vincent

“…Within drug discovery, the goal of AI scientists and cheminformaticians is to help identify molecular starting points that will develop into safe and…”
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OpenFEPOPS: A Python implementation of the FEPOPS molecular similarity technique by Chen, Yan-Kai, Houston, Douglas R., Auer, Manfred, Shave, Steven

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A Novel Confocal Scanning Protein–Protein Interaction Assay (PPI-CONA) Reveals Exceptional Selectivity and Specificity of CC0651, a Small Molecule Binding Enhancer of the Weak Interaction between the E2 Ubiquitin-Conjugating Enzyme CDC34A and Ubiquitin by Koszela, Joanna, Pham, Nhan T., Shave, Steven, St-Cyr, Daniel, Ceccarelli, Derek F., Orlicky, Steven, Marinier, Anne, Sicheri, Frank, Tyers, Mike, Auer, Manfred

“…Protein–protein interactions (PPIs) are some of the most challenging target classes in drug discovery. Highly sensitive detection techniques are required for…”
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Chemical Interrogation of Nuclear Size Identifies Compounds with Cancer Cell Line-Specific Effects on Migration and Invasion by Tollis, Sylvain, Rizzotto, Andrea, Pham, Nhan T, Koivukoski, Sonja, Sivakumar, Aishwarya, Shave, Steven, Wildenhain, Jan, Zuleger, Nikolaj, Keys, Jeremy T, Culley, Jayne, Zheng, Yijing, Lammerding, Jan, Carragher, Neil O, Brunton, Valerie G, Latonen, Leena, Auer, Manfred, Tyers, Mike, Schirmer, Eric C

“…Background: Lower survival rates for many cancer types correlate with changes in nuclear size/scaling in a tumor-type/tissue-specific manner. Hypothesizing…”
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Repositioning Brusatol as a Transmission Blocker of Malaria Parasites by Cox, Amelia, Krishnankutty, Neelima, Shave, Steven, Howick, Virginia M., Auer, Manfred, La Clair, James J., Philip, Nisha

“…Currently, primaquine is the only malaria transmission-blocking drug recommended by the WHO. Recent efforts have highlighted the importance of discovering new…”
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