Search Results - "Shaoliang Peng"

MultiDTI: drug–target interaction prediction based on multi-modal representation learning to bridge the gap between new chemical entities and known heterogeneous network by Zhou, Deshan, Xu, Zhijian, Li, WenTao, Xie, Xiaolan, Peng, Shaoliang

“…Abstract Motivation Predicting new drug–target interactions is an important step in new drug development, understanding of its side effects and drug…”
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A hybrid two-stage financial stock forecasting algorithm based on clustering and ensemble learning by Xu, Ying, Yang, Cuijuan, Peng, Shaoliang, Nojima, Yusuke

“…This paper investigates the problem of the stock closing price forecasting for the stock market. Based on existing two-stage fusion models in the literature,…”
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Joint consensus and diversity for multi-view semi-supervised classification by Zhuge, Wenzhang, Hou, Chenping, Peng, Shaoliang, Yi, Dongyun

“…As data can be acquired in an ever-increasing number of ways, multi-view data is becoming more and more available. Considering the high price of labeling data…”
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Improving prediction performance of general protein language model by domain-adaptive pretraining on DNA-binding protein by Zeng, Wenwu, Dou, Yutao, Pan, Liangrui, Xu, Liwen, Peng, Shaoliang

“…DNA-protein interactions exert the fundamental structure of many pivotal biological processes, such as DNA replication, transcription, and gene regulation…”
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A Review of Blockchain-Based Secure Sharing of Healthcare Data by Xi, Peng, Zhang, Xinglong, Wang, Lian, Liu, Wenjuan, Peng, Shaoliang

“…Medical data contains multiple records of patient data that are important for subsequent treatment and future research. However, it needs to be stored and…”
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Machine Learning Applications in Drug Repurposing by Yang, Fan, Zhang, Qi, Ji, Xiaokang, Zhang, Yanchun, Li, Wentao, Peng, Shaoliang, Xue, Fuzhong

“…The coronavirus disease (COVID-19) has led to an rush to repurpose existing drugs, although the underlying evidence base is of variable quality. Drug…”
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NeRD: a multichannel neural network to predict cellular response of drugs by integrating multidimensional data by Cheng, Xiaoxiao, Dai, Chong, Wen, Yuqi, Wang, Xiaoqi, Bo, Xiaochen, He, Song, Peng, Shaoliang

“…Background Considering the heterogeneity of tumors, it is a key issue in precision medicine to predict the drug response of each individual. The accumulation…”
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SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler by Luo, Ruibang, Liu, Binghang, Xie, Yinlong, Li, Zhenyu, Huang, Weihua, Yuan, Jianying, He, Guangzhu, Chen, Yanxiang, Pan, Qi, Liu, Yunjie, Tang, Jingbo, Wu, Gengxiong, Zhang, Hao, Shi, Yujian, Liu, Yong, Yu, Chang, Wang, Bo, Lu, Yao, Han, Changlei, Cheung, David W, Yiu, Siu-Ming, Peng, Shaoliang, Xiaoqian, Zhu, Liu, Guangming, Liao, Xiangke, Li, Yingrui, Yang, Huanming, Wang, Jian, Lam, Tak-Wah, Wang, Jun

“…There is a rapidly increasing amount of de novo genome assembly using next-generation sequencing (NGS) short reads; however, several big challenges remain to…”
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OffScan: a universal and fast CRISPR off-target sites detection tool by Cui, Yingbo, Liao, Xiangke, Peng, Shaoliang, Tang, Tao, Huang, Chun, Yang, Canqun

“…The Type II clustered regularly interspaced short palindromic repeats (CRISPR) and CRISPR-associated proteins (Cas) is a powerful genome editing technology,…”
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Cotton D genome assemblies built with long-read data unveil mechanisms of centromere evolution and stress tolerance divergence by Yang, Zhaoen, Ge, Xiaoyang, Li, Weinan, Jin, Yuying, Liu, Lisen, Hu, Wei, Liu, Fuyan, Chen, Yanli, Peng, Shaoliang, Li, Fuguang

“…Many of genome features which could help unravel the often complex post-speciation evolution of closely related species are obscured because of their location…”
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CRISP-view: a database of functional genetic screens spanning multiple phenotypes by Cui, Yingbo, Cheng, Xiaolong, Chen, Qing, Song, Bicna, Chiu, Anthony, Gao, Yuan, Dawson, Tyson, Chao, Lumen, Zhang, Wubing, Li, Dian, Zeng, Zexiang, Yu, Jijun, Li, Zexu, Fei, Teng, Peng, Shaoliang, Li, Wei

“…Abstract High-throughput genetic screening based on CRISPR/Cas9 or RNA-interference (RNAi) enables the exploration of genes associated with the phenotype of…”
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The Integrative Method Based on the Module-Network for Identifying Driver Genes in Cancer Subtypes by Lu, Xinguo, Li, Xing, Liu, Ping, Qian, Xin, Miao, Qiumai, Peng, Shaoliang

“…With advances in next-generation sequencing(NGS) technologies, a large number of multiple types of high-throughput genomics data are available. A great…”
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Performance Improvement of Atmospheric Continuous-Variable Quantum Key Distribution with Untrusted Source by Liao, Qin, Xiao, Gang, Peng, Shaoliang

“…Atmospheric continuous-variable quantum key distribution (ACVQKD) has been proven to be secure theoretically with the assumption that the signal source is well…”
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Interface structure and work function of W-Cu interfaces by Liang, C. P., Fan, J. L., Gong, H. R., Liao, Xiangke, Zhu, Xiaoqian, Peng, Shaoliang

“…First principles calculation reveals that W-Cu interfaces have high interface strength when the number of overlayers is less than 2, and that (111)Cu/(110)W…”
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IMGPU: GPU-Accelerated Influence Maximization in Large-Scale Social Networks by Xiaodong Liu, Mo Li, Shanshan Li, Shaoliang Peng, Xiangke Liao, Xiaopei Lu

“…Influence Maximization aims to find the top-(K) influential individuals to maximize the influence spread within a social network, which remains an important…”
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MHGTMDA: Molecular heterogeneous graph transformer based on biological entity graph for miRNA-disease associations prediction by Zou, Haitao, Ji, Boya, Zhang, Meng, Liu, Fen, Xie, Xiaolan, Peng, Shaoliang

“…MicroRNAs (miRNAs) play a crucial role in the prevention, prognosis, diagnosis, and treatment of complex diseases. Existing computational methods primarily…”
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VISPR-online: a web-based interactive tool to visualize CRISPR screening experiments by Cui, Yingbo, Wang, Zihang, Köster, Johannes, Liao, Xiangke, Peng, Shaoliang, Tang, Tao, Huang, Chun, Yang, Canqun

“…VISPR is an interactive visualization and analysis framework for CRISPR screening experiments. However, it only supports the output of MAGeCK, and requires…”
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SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner by Luo, Ruibang, Wong, Thomas, Zhu, Jianqiao, Liu, Chi-Man, Zhu, Xiaoqian, Wu, Edward, Lee, Lap-Kei, Lin, Haoxiang, Zhu, Wenjuan, Cheung, David W, Ting, Hing-Fung, Yiu, Siu-Ming, Peng, Shaoliang, Yu, Chang, Li, Yingrui, Li, Ruiqiang, Lam, Tak-Wah

“…To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be configured to favor…”
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cmFSM: a scalable CPU-MIC coordinated drug-finding tool by frequent subgraph mining by Yang, Shunyun, Guo, Runxin, Liu, Rui, Liao, Xiangke, Zou, Quan, Shi, Benyun, Peng, Shaoliang

“…Frequent subgraphs mining is a significant problem in many practical domains. The solution of this kind of problem can particularly used in some large-scale…”
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A Radiomics Signature to Quantitatively Analyze COVID-19-Infected Pulmonary Lesions by Qiu, Jiajun, Peng, Shaoliang, Yin, Jin, Wang, Junren, Jiang, Jingwen, Li, Zhenlin, Song, Huan, Zhang, Wei

“…Assessing pulmonary lesions using computed tomography (CT) images is of great significance to the severity diagnosis and treatment of coronavirus disease 2019…”
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