Search Results - "Shang, Helen H"

Functional regions of the peroxin Pex19 necessary for peroxisome biogenesis by Agrawal, Gaurav, Shang, Helen H., Xia, Zhi-Jie, Subramani, Suresh

“…The peroxins Pex19 and Pex3 play an indispensable role in peroxisomal membrane protein (PMP) biogenesis, peroxisome division, and inheritance. Pex19 plays…”
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Feeding intolerance in critically ill patients with COVID-19 by Liu, Rebecca, Paz, Mary, Siraj, Layla, Boyd, Taylor, Salamone, Silvia, Lite, Thúy-Lan Võ, Leung, Krystle M., Chirinos, Josue D., Shang, Helen H., Townsend, Matthew J., Rho, Junsung, Ni, Peiyun, Ranganath, Kushi, Violante, April D., Zhao, Zezhou, Silvernale, Casey, Ahmad, Imama, Krasnow, Nira A., Barnett, Erica S., Harisinghani, Mukesh, Kuo, Braden, Black, Katharine E., Staller, Kyle

“…Early reports suggest significant difficulty with enteral feeding in critically ill COVID-19 patients. This study aimed to characterize the prevalence,…”
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DICER1 mutations in primary central nervous system tumors: new insights into histologies, mutations, and prognosis by Liu, Kevin X., Shang, Helen H., Cacciotti, Chantel, Everdell, Emily, Aizer, Ayal A., Rahman, Rifaquat, Malinowski, Seth, Meredith, David M., Kamihara, Junne, Wen, Patrick Y., Ligon, Keith L., Chi, Susan N., Marcus, Karen J., Yeo, Kee Kiat, Alexandrescu, Sanda, Haas-Kogan, Daphne A.

“…Purpose We sought to characterize clinical outcomes for adult and pediatric patients with primary CNS tumors harboring DICER1 mutations or loss of DICER1 …”
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Clinically Relevant Latent Space Embedding of Cancer Histopathology Slides Through Variational Autoencoder based Image Compression by Nasr, Mohammad Sadegh, Hajighasemi, Amir, Koomey, Paul, Malidarreh, Parisa Boodaghi, Robben, Michael, Saurav, Jillur Rahman, Shang, Helen H, Huber, Manfred, Luber, Jacob M.

“…In this paper, we introduce a Variational Autoencoder (VAE) based training approach that can compress and decompress cancer pathology slides at a compression…”
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A SSIM Guided cGAN Architecture For Clinically Driven Generative Image Synthesis of Multiplexed Spatial Proteomics Channels by Saurav, Jillur Rahman, Nasr, Mohammad Sadegh, Shang, Helen H, Koomey, Paul, Robben, Michael, Huber, Manfred, Weidanz, Jon, Ryan, Brid, Ruppin, Eytan, Jiang, Peng, Luber, Jacob M.

“…Histopathological work in clinical labs often relies on immunostaining of proteins, which can be time-consuming and costly. Multiplexed spatial proteomics…”
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The state of applying artificial intelligence to tissue imaging for cancer research and early detection [version 1; peer review: awaiting peer review] by Robben, Michael, Hajighasemi, Amir, Nasr, Mohammad Sadegh, Veerla, Jai Prakesh, Alsup, Anne Marie, Rout, Biraaj, Shang, Helen H., Fowlds, Kelli, Malidarreh, Parisa Boodaghi, Koomey, Paul, Saurav, Jillur Rahman, Luber, Jacob M.

“…Artificial intelligence (AI) represents a new frontier in human medicine that could save more lives and reduce the costs, thereby increasing accessibility. As…”
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SpatialVisVR: An Immersive, Multiplexed Medical Image Viewer with Contextual Similar-Patient Search by Veerla, Jai Prakash, Sai Guttikonda, Partha, Hajighasemi, Amir, Saurav, Jillur Rahman, Darji, Aarti, Reynolds, Cody T, Mohamed, Mohamed, Nasr, Mohammad S, Shang, Helen H, Luber, Jacob M

“…In contemporary pathology, multiplexed immunofluorescence (mIF) and multiplex immunohistochemistry (mIHC) present both significant opportunities and…”
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SpatialVisVR: An Immersive, Multiplexed Medical Image Viewer With Contextual Similar-Patient Search by Veerla, Jai Prakash, Guttikonda, Partha Sai, Hajighasemi, Amir, Saurav, Jillur Rahman, Darji, Aarti, Reynolds, Cody T, Mohamed, Mohamed, Nasr, Mohammad S, Shang, Helen H, Luber, Jacob M

“…In contemporary pathology, multiplexed immunofluorescence (mIF) and multiplex immunohistochemistry (mIHC) present both significant opportunities and…”
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Peptide Sequencing Via Protein Language Models by Pham, Thuong Le Hoai, Saurav, Jillur Rahman, Omere, Aisosa A, Heyl, Calvin J, Nasr, Mohammad Sadegh, Reynolds, Cody Tyler, Veerla, Jai Prakash Yadav, Shang, Helen H, Jaworski, Justyn, Ravenscraft, Alison, Buonomo, Joseph Anthony, Luber, Jacob M

“…We introduce a protein language model for determining the complete sequence of a peptide based on measurement of a limited set of amino acids. To date, protein…”
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Multimodal Pathology Image Search Between H&E Slides and Multiplexed Immunofluorescent Images by Hajighasemi, Amir, Saurav, MD Jillur Rahman, Nasr, Mohammad S, Veerla, Jai Prakash, Darji, Aarti, Malidarreh, Parisa Boodaghi, Robben, Michael, Shang, Helen H, Luber, Jacob M

“…We present an approach for multimodal pathology image search, using dynamic time warping (DTW) on Variational Autoencoder (VAE) latent space that is fed into a…”
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Clinically Relevant Latent Space Embedding of Cancer Histopathology Slides through Variational Autoencoder Based Image Compression by Nasr, Mohammad Sadegh, Hajighasemi, Amir, Koomey, Paul, Malidarreh, Parisa Boodaghi, Robben, Michael, Saurav, Jillur Rahman, Shang, Helen H, Huber, Manfred, Luber, Jacob M

“…2023 IEEE ISBI, Cartagena, Colombia, 2023, pp. 1-5 In this paper, we introduce a Variational Autoencoder (VAE) based training approach that can compress and…”
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Histopathology Slide Indexing and Search: Are We There Yet? by Shang, Helen H, Nasr, Mohammad Sadegh, Veerla, Jai Prakash, Malidarreh, Parisa Boodaghi, Saurav, MD Jillur Rahman, Hajighasemi, Amir, Huber, Manfred, Moleta, Chace, Makker, Jitin, Luber, Jacob M

“…The search and retrieval of digital histopathology slides is an important task that has yet to be solved. In this case study, we investigate the clinical…”
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The State of Applying Artificial Intelligence to Tissue Imaging for Cancer Research and Early Detection by Robben, Michael, Hajighasemi, Amir, Nasr, Mohammad Sadegh, Veerla, Jai Prakesh, Alsup, Anne M, Rout, Biraaj, Shang, Helen H, Fowlds, Kelli, Malidarreh, Parisa Boodaghi, Koomey, Paul, Saurav, MD Jillur Rahman, Luber, Jacob M

“…F1000Research 2023, 12:1436 Artificial intelligence represents a new frontier in human medicine that could save more lives and reduce the costs, thereby…”
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Real-Time Diagnostic Integrity Meets Efficiency: A Novel Platform-Agnostic Architecture for Physiological Signal Compression by Vora, Neel R, Hajighasemi, Amir, Reynolds, Cody T, Radmehr, Amirmohammad, Mohamed, Mohamed, Saurav, Jillur Rahman, Aziz, Abdul, Veerla, Jai Prakash, Nasr, Mohammad S, Lotspeich, Hayden, Guttikonda, Partha Sai, Pham, Thuong, Darji, Aarti, Malidarreh, Parisa Boodaghi, Shang, Helen H, Harvey, Jay, Ding, Kan, Nguyen, Phuc, Luber, Jacob M

“…Head-based signals such as EEG, EMG, EOG, and ECG collected by wearable systems will play a pivotal role in clinical diagnosis, monitoring, and treatment of…”
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