Search Results - "Setubal, João Carlos"

Butyrate Protects Mice from Clostridium difficile-Induced Colitis through an HIF-1-Dependent Mechanism by Fachi, José Luís, Felipe, Jaqueline de Souza, Pral, Laís Passariello, da Silva, Bruna Karadi, Corrêa, Renan Oliveira, de Andrade, Mirella Cristiny Pereira, da Fonseca, Denise Morais, Basso, Paulo José, Câmara, Niels Olsen Saraiva, de Sales e Souza, Éricka Lorenna, dos Santos Martins, Flaviano, Guima, Suzana Eiko Sato, Thomas, Andrew Maltez, Setubal, João Carlos, Magalhães, Yuli Thamires, Forti, Fábio Luis, Candreva, Thamiris, Rodrigues, Hosana Gomes, de Jesus, Marcelo Bispo, Consonni, Sílvio Roberto, Farias, Alessandro dos Santos, Varga-Weisz, Patrick, Vinolo, Marco Aurélio Ramirez

“…Antibiotic-induced dysbiosis is a key factor predisposing intestinal infection by Clostridium difficile. Here, we show that interventions that restore butyrate…”
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Gut Microbiota Profile of Obese Diabetic Women Submitted to Roux-en-Y Gastric Bypass and Its Association with Food Intake and Postoperative Diabetes Remission by Al Assal, Karina, Prifti, Edi, Belda, Eugeni, Sala, Priscila, Clément, Karine, Dao, Maria-Carlota, Doré, Joel, Levenez, Florence, Taddei, Carla R, Fonseca, Danielle Cristina, Rocha, Ilanna Marques, Balmant, Bianca Depieri, Thomas, Andrew Maltez, Santo, Marco A, Dias-Neto, Emmanuel, Setubal, João Carlos, Zucker, Jean-Daniel, Belarmino, Giliane, Torrinhas, Raquel Susana, Waitzberg, Dan L

“…Gut microbiota composition is influenced by environmental factors and has been shown to impact body metabolism. To assess the gut microbiota profile before and…”
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Complete genome sequence and analysis of Alcaligenes faecalis strain Mc250, a new potential plant bioinoculant by Felestrino, Érica Barbosa, Sanchez, Angélica Bianchini, Caneschi, Washington Luiz, Lemes, Camila Gracyelle de Carvalho, Assis, Renata de Almeida Barbosa, Cordeiro, Isabella Ferreira, Fonseca, Natasha Peixoto, Villa, Morghana Marina, Vieira, Izadora Tabuso, Kamino, Luciana Hiromi Yoshino, do Carmo, Flávio Fonseca, da Silva, Aline Maria, Thomas, Andrew Maltez, Patané, José Salvatore Leister, Ferreira, Fernanda Carla, de Freitas, Leandro Grassi, Varani, Alessandro de Mello, Ferro, Jesus Aparecido, Silva, Robson Soares, Almeida, Nalvo Franco, Garcia, Camila Carrião Machado, Setubal, João Carlos, Moreira, Leandro Marcio

“…Here we present and analyze the complete genome of Alcaligenes faecalis strain Mc250 (Mc250), a bacterium isolated from the roots of Mimosa calodendron, an…”
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Metagenomic analysis of a tropical composting operation at the são paulo zoo park reveals diversity of biomass degradation functions and organisms by Martins, Layla Farage, Antunes, Luciana Principal, Pascon, Renata C, de Oliveira, Julio Cezar Franco, Digiampietri, Luciano A, Barbosa, Deibs, Peixoto, Bruno Malveira, Vallim, Marcelo A, Viana-Niero, Cristina, Ostroski, Eric H, Telles, Guilherme P, Dias, Zanoni, da Cruz, João Batista, Juliano, Luiz, Verjovski-Almeida, Sergio, da Silva, Aline Maria, Setubal, João Carlos

“…Composting operations are a rich source for prospection of biomass degradation enzymes. We have analyzed the microbiomes of two composting samples collected in…”
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Circulating Plasma miRNA and Clinical/Hemodynamic Characteristics Provide Additional Predictive Information About Acute Pulmonary Thromboembolism, Chronic Thromboembolic Pulmonary Hypertension and Idiopathic Pulmonary Hypertension by Fabro, Alexandre Todorovic, Machado-Rugolo, Juliana, Baldavira, Camila Machado, Prieto, Tabatha Gutierrez, Farhat, Cecília, Rotea ManGone, Flavia Regina, Batah, Sabrina Setembre, Cruvinel, Heloísa Resende, Aldá, Maiara Almeida, Monteiro, Jhonatas Sirino, Pádua, Adriana Inacio, Morais, Sirlei Siani, Antônio de Oliveira, Rogério, Santos, Marcel Koenigkam, Baddini-Martinez, José Antônio, Setubal, João Carlos, Rainho, Claudia Aparecida, Yoo, Hugo Hyung Bok, Silva, Pedro Leme, Nagai, Maria Aparecida, Capelozzi, Vera Luiza

“…Idiopathic pulmonary artery hypertension (IPAH), chronic thromboembolic pulmonary hypertension (CTEPH), and acute pulmonary embolism (APTE) are…”
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Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation by Thomas, Andrew Maltez, Manghi, Paolo, Asnicar, Francesco, Pasolli, Edoardo, Armanini, Federica, Zolfo, Moreno, Beghini, Francesco, Manara, Serena, Karcher, Nicolai, Pozzi, Chiara, Gandini, Sara, Serrano, Davide, Tarallo, Sonia, Francavilla, Antonio, Gallo, Gaetano, Trompetto, Mario, Ferrero, Giulio, Mizutani, Sayaka, Shiroma, Hirotsugu, Shiba, Satoshi, Shibata, Tatsuhiro, Yachida, Shinichi, Yamada, Takuji, Wirbel, Jakob, Schrotz-King, Petra, Ulrich, Cornelia M., Brenner, Hermann, Arumugam, Manimozhiyan, Bork, Peer, Zeller, Georg, Cordero, Francesca, Dias-Neto, Emmanuel, Setubal, João Carlos, Tett, Adrian, Pardini, Barbara, Rescigno, Maria, Waldron, Levi, Naccarati, Alessio, Segata, Nicola

“…Several studies have investigated links between the gut microbiome and colorectal cancer (CRC), but questions remain about the replicability of biomarkers…”
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The Candidatus Liberibacter-Host Interface: Insights into Pathogenesis Mechanisms and Disease Control by Wang, Nian, Pierson, Elizabeth A, Setubal, João Carlos, Xu, Jin, Levy, Julien G, Zhang, Yunzeng, Li, Jinyun, Rangel, Luiz Thiberio, Martins, Joaquim

“…" Candidatus Liberibacter" species are associated with economically devastating diseases of citrus, potato, and many other crops. The importance of these…”
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Publisher Correction: Discovery and description of novel phage genomes from urban microbiomes sampled by the MetaSUB consortium by Flores, Vinicius S., Amgarten, Deyvid E., Iha, Bruno Koshin Vázquez, Ryon, Krista A., Danko, David, Tierney, Braden T., Mason, Christopher, da Silva, Aline Maria, Setubal, João Carlos

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Identification and characterization of putative Aeromonas spp. T3SS effectors by Rangel, Luiz Thiberio, Marden, Jeremiah, Colston, Sophie, Setubal, João Carlos, Graf, Joerg, Gogarten, Johann Peter

“…The genetic determinants of bacterial pathogenicity are highly variable between species and strains. However, a factor that is commonly associated with…”
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Genome-resolved metagenome and metatranscriptome analyses of thermophilic composting reveal key bacterial players and their metabolic interactions by Braga, Lucas Palma Perez, Pereira, Roberta Verciano, Martins, Layla Farage, Moura, Livia Maria Silva, Sanchez, Fabio Beltrame, Patané, José Salvatore Leister, da Silva, Aline Maria, Setubal, João Carlos

“…Composting is an important technique for environment-friendly degradation of organic material, and is a microbe-driven process. Previous metagenomic studies of…”
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Isolation and characterization of vB_XciM_LucasX, a new jumbo phage that infects Xanthomonas citri and Xanthomonas fuscans by Marquioni, Vinícius, Rossi, Fernando Pacheco Nobre, Mendonça, Deborah Cezar, Martins, Layla Farage, Behlau, Franklin, Setubal, João Carlos, da Silva, Aline Maria, Novo-Mansur, Maria Teresa Marques

“…Citrus canker is one of the main bacterial diseases that affect citrus crops and is caused by Xanthomonas citri which affects all citrus species worldwide. New…”
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Discovery and description of novel phage genomes from urban microbiomes sampled by the MetaSUB consortium by Flores, Vinicius S., Amgarten, Deyvid E., Iha, Bruno Koshin Vázquez, Ryon, Krista A., Danko, David, Tierney, Braden T., Mason, Christopher, da Silva, Aline Maria, Setubal, João Carlos

“…Bacteriophages are recognized as the most abundant members of microbiomes and have therefore a profound impact on microbial communities through the…”
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Assessing the efficacy of eDNA metabarcoding for measuring microbial biodiversity within forest ecosystems by Ladin, Zachary S., Ferrell, Barbra, Dums, Jacob T., Moore, Ryan M., Levia, Delphis F., Shriver, W. Gregory, D’Amico, Vincent, Trammell, Tara L. E., Setubal, João Carlos, Wommack, K. Eric

“…We investigated the nascent application and efficacy of sampling and sequencing environmental DNA (eDNA) in terrestrial environments using rainwater that…”
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Anti-Trypanosoma cruzi antibody profiling in patients with Chagas disease treated with benznidazole assessed by genome phage display by Rodriguez Carnero, Luis Antonio, Kuramoto, Andréia, Campos de Oliveira, Léa, Monteiro, Jhonatas Sirino, Setubal, João Carlos, Cunha-Neto, Edécio, Cerdeira Sabino, Ester, Giordano, Ricardo José

“…There have been significant improvements in Chagas disease therapy and it is now widely accepted that most patients with chronic disease might benefit from…”
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Global Distribution and Evolution of Mycobacterium bovis Lineages by Zimpel, Cristina Kraemer, Patané, José Salvatore L., Guedes, Aureliano Coelho Proença, de Souza, Robson F., Silva-Pereira, Taiana T., Camargo, Naila C. Soler, de Souza Filho, Antônio F., Ikuta, Cássia Y., Neto, José Soares Ferreira, Setubal, João Carlos, Heinemann, Marcos Bryan, Guimaraes, Ana Marcia Sa

“…Mycobacterium bovis is the main causative agent of zoonotic tuberculosis in humans and frequently devastates livestock and wildlife worldwide. Previous studies…”
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Characterization of novel hydrocarbon-degrading Gordonia paraffinivorans and Gordonia sihwensis strains isolated from composting by Silva, Natalia Maria, de Oliveira, Aline Márcia Silva Araújo, Pegorin, Stefania, Giusti, Camila Escandura, Ferrari, Vitor Batista, Barbosa, Deibs, Martins, Layla Farage, Morais, Carlos, Setubal, João Carlos, Vasconcellos, Suzan Pantaroto, da Silva, Aline Maria, de Oliveira, Julio Cezar Franco, Pascon, Renata Castiglioni, Viana-Niero, Cristina

“…Hydrocarbons are important environmental pollutants, and the isolation and characterization of new microorganisms with the ability to degrade these compounds…”
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Machine learning meets genome assembly by Padovani de Souza, Kleber, Setubal, João Carlos, Ponce de Leon F. de Carvalho, André Carlos, Oliveira, Guilherme, Chateau, Annie, Alves, Ronnie

“…Abstract Motivation: With the recent advances in DNA sequencing technologies, the study of the genetic composition of living organisms has become more…”
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Plasmodium falciparum Acetyl-CoA Synthetase Is Essential for Parasite Intraerythrocytic Development and Chromatin Modification by Prata, Isadora Oliveira, Cubillos, Eliana Fernanda Galindo, Krüger, Arne, Barbosa, Deibs, Martins, Joaquim, Setubal, João Carlos, Wunderlich, Gerhard

“…The malaria parasite Plasmodium falciparum possesses a unique Acetyl-CoA Synthetase (PfACS), which provides acetyl moieties for different metabolic and…”
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Alcohol and tobacco consumption affects bacterial richness in oral cavity mucosa biofilms by Thomas, Andrew Maltez, Gleber-Netto, Frederico Omar, Fernandes, Gustavo Ribeiro, Amorim, Maria, Barbosa, Luisa Fernanda, Francisco, Ana Lúcia Noronha, de Andrade, Arthur Guerra, Setubal, João Carlos, Kowalski, Luiz Paulo, Nunes, Diana Noronha, Dias-Neto, Emmanuel

“…Today there are more than 2 billion alcohol users and about 1.3 billion tobacco users worldwide. The chronic and heavy use of these two substances is at the…”
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Serratia liquefaciens FG3 isolated from a metallophyte plant sheds light on the evolution and mechanisms of adaptive traits in extreme environments by Caneschi, Washington Luiz, Sanchez, Angélica Bianchini, Felestrino, Érica Barbosa, Lemes, Camila Gracyelle de Carvalho, Cordeiro, Isabella Ferreira, Fonseca, Natasha Peixoto, Villa, Morghana Marina, Vieira, Izadora Tabuso, Moraes, Lauro Ângelo Gonçalves, Assis, Renata de Almeida Barbosa, do Carmo, Flávio Fonseca, Kamino, Luciana Hiromi Yoshino, Silva, Robson Soares, Ferro, Jesus Aparecido, Ferro, Maria Inês Tiraboschi, Ferreira, Rafael Marini, Santos, Vera Lúcia, Silva, Ubiana de Cássia Mourão, Almeida, Nalvo Franco, Varani, Alessandro de Mello, Garcia, Camila Carrião Machado, Setubal, João Carlos, Moreira, Leandro Marcio

“…Serratia liquefaciens strain FG3 (SlFG3), isolated from the flower of Stachytarpheta glabra in the Brazilian ferruginous fields, has distinctive genomic,…”
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