Search Results - "Settle, Brett"

aMatReader: Importing adjacency matrices via Cytoscape Automation [version 2; peer review: 2 approved] by Settle, Brett, Otasek, David, Morris, John H, Demchak, Barry

“…Adjacency matrices are useful for storing pairwise interaction data, such as correlations between gene pairs in a pathway or similarities between genes and…”
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Copycat Layout: Network layout alignment via Cytoscape Automation by Settle, Brett, Otasek, David, Morris, John H, Demchak, Barry

“…The copycatLayout app is a network-based visual differential analysis tool that improves upon the existing layoutSaver app and is delivered pre-installed with…”
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aMatReader: Importing adjacency matrices via Cytoscape Automation [version 1; peer review: 2 approved] by Settle, Brett, Otasek, David, Morris, John H, Demchak, Barry

“…Adjacency matrices are useful for storing pairwise interaction data, such as correlations between gene pairs in a pathway or similarities between genes and…”
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Copycat Layout: Network layout alignment via Cytoscape Automation by Settle, Brett, Otasek, David, Morris, John H, Demchak, Barry

“…The copycatLayout app is a network-based visual differential analysis tool that improves upon the existing layoutSaver app and is delivered pre-installed with…”
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An algorithm for automated detection, localization and measurement of local calcium signals from camera-based imaging by Ellefsen, Kyle L, Settle, Brett, Parker, Ian, Smith, Ian F

“…Graphical abstract…”
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Applications of FLIKA, a Python-based image processing and analysis platform, for studying local events of cellular calcium signaling by Ellefsen, Kyle L., Lock, Jeffrey T., Settle, Brett, Karsten, Carley A., Parker, Ian

“…The patterning of cytosolic Ca2+ signals underlies their ubiquitous ability to specifically regulate numerous cellular processes. Advances in fluorescence…”
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The Cytoscape Automation app article collection [version 1; peer review: not peer reviewed] by Demchak, Barry, Otasek, David, Pico, Alexander R, Bader, Gary D, Ono, Keiichiro, Settle, Brett, Sage, Eric, Morris, John H, Longabaugh, William, Lopes, Christian, Kucera, Michael, Treister, Adam, Schwikowski, Benno, Molenaar, Piet, Ideker, Trey

“…Cytoscape is the premiere platform for interactive analysis, integration and visualization of network data. While Cytoscape itself delivers much basic…”
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