Search Results - "Selkov, E"

WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction by Overbeek, R, Larsen, N, Pusch, G D, D'Souza, M, Selkov, Jr, E, Kyrpides, N, Fonstein, M, Maltsev, N, Selkov, E

“…The WIT (What Is There) (http://wit.mcs.anl.gov/WIT2/) system has been designed to support comparative analysis of sequenced genomes and to generate metabolic…”
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Mathematical simulation and analysis of cellular metabolism and regulation by Goryanin, I, Hodgman, T C, Selkov, E

“…A better understanding of the biological phenomena observed in cells requires the creation and analysis of mathematical models of cellular metabolism and…”
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MPW: The Metabolic Pathways Database by Selkov, Evgeni, Grechkin, Yuri, Mikhailova, Natalia, Selkov, Evgeni

“…The Metabolic Pathways Database (MPW) (http://www.biobase.com/emphome.html/homepage.html/pags/pathways.html) a derivative of EMP (http://www.biobase.com/EMP)…”
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A reconstruction of the metabolism of Methanococcus jannaschii from sequence data by Selkov, E, Maltsev, N, Olsen, Gary J, Overbeek, R, Whitman, William B

“…The interpretation of the Methanococcus jannaschii genome will inevitably require many years of effort. This initial attempt to connect the sequence data to…”
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Whole-Genome Comparative Analysis of Three Phytopathogenic Xylella fastidiosa Strains by Bhattacharyya, Anamitra, Stilwagen, Stephanie, Ivanova, Natalia, D'Souza, Mark, Bernal, Axel, Lykidis, Athanasios, Kapatral, Vinayak, Anderson, Iain, Larsen, Niels, Los, Tamara, Reznik, Gary, Selkov, Eugene, Walunas, Theresa L., Feil, Helene, Feil, William S., Purcell, Alexander, Lassez, Jean-Louis, Hawkins, Trevor L., Haselkorn, Robert, Overbeek, Ross, Predki, Paul F., Kyrpides, Nikos C.

“…Xylella fastidiosa (Xf) causes wilt disease in plants and is responsible for major economic and crop losses globally. Owing to the public importance of this…”
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Draft sequencing and comparative genomics of Xylella fastidiosa strains reveal novel biological insights by Bhattacharyya, Anamitra, Stilwagen, Stephanie, Reznik, Gary, Feil, Helene, Feil, William S, Anderson, Iain, Bernal, Axel, D'Souza, Mark, Ivanova, Natalia, Kapatral, Vinayak, Larsen, Niels, Los, Tamara, Lykidis, Athanasios, Selkov, Jr, Eugene, Walunas, Theresa L, Purcell, Alexander, Edwards, Rob A, Hawkins, Trevor, Haselkorn, Robert, Overbeek, Ross, Kyrpides, Nikos C, Predki, Paul F

“…Draft sequencing is a rapid and efficient method for determining the near-complete sequence of microbial genomes. Here we report a comparative analysis of one…”
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The metabolic pathway collection: an update by Selkov, Evgeni, Galimova, Miliusha, Goryanin, Igor, Gretchkin, Yuri, Ivanova, Natalia, Komarov, Yuri, Maltsev, Natalia, Mikhailova, Natalia, Nenashev, Valeri, Overbeek, Ross, Panyushkina, Elena, Pronevitch, Lyudmila, Selkov, Evgeni

“…The Metabolic Pathway Collection from EMP is an extraction of data from the larger Enzymes and Metabolic Pathways database (EMP). This extraction has been made…”
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A community-driven global reconstruction of human metabolism by Thiele, Ines, Swainston, Neil, Fleming, Ronan M T, Hoppe, Andreas, Sahoo, Swagatika, Aurich, Maike K, Haraldsdottir, Hulda, Mo, Monica L, Rolfsson, Ottar, Stobbe, Miranda D, Thorleifsson, Stefan G, Agren, Rasmus, Bölling, Christian, Bordel, Sergio, Chavali, Arvind K, Dobson, Paul, Dunn, Warwick B, Endler, Lukas, Hala, David, Hucka, Michael, Hull, Duncan, Jameson, Daniel, Jamshidi, Neema, Jonsson, Jon J, Juty, Nick, Keating, Sarah, Nookaew, Intawat, Le Novère, Nicolas, Malys, Naglis, Mazein, Alexander, Papin, Jason A, Price, Nathan D, Selkov, Evgeni, Sigurdsson, Martin I, Simeonidis, Evangelos, Sonnenschein, Nikolaus, Smallbone, Kieran, Sorokin, Anatoly, van Beek, Johannes H G M, Weichart, Dieter, Goryanin, Igor, Nielsen, Jens, Westerhoff, Hans V, Kell, Douglas B, Mendes, Pedro, Palsson, Bernhard Ø

“…The metabolic modeling community has curated information from five models to create the most comprehensive model of human metabolism to date. Multiple models…”
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Representation of function: the next step by Overbeek, R, Larsen, N, Smith, W, Maltsev, N, Selkov, E

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The metabolic pathway collection from EMP: the enzymes and metabolic pathways database by Selkov, E, Basmanova, S, Gaasterland, T, Goryanin, I, Gretchkin, Y, Maltsev, N, Nenashev, V, Overbeek, R, Panyushkina, E, Pronevitch, L, Selkov, Jr, E, Yunus, I

“…The Enzymes and Metabolic Pathways database (EMP) is an encoding of the contents of over 10 000 original publications on the topics of enzymology and…”
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The Genome Sequence of the Facultative Intracellular Pathogen Brucella melitensis by DelVecchio, Vito G., Kapatral, Vinayak, Redkar, Rajendra J., Patra, Guy, Mujer, Cesar, Los, Tamara, Ivanova, Natalia, Anderson, Iain, Bhattacharyya, Anamitra, Lykidis, Athanasios, Reznik, Gary, Jablonski, Lynn, Larsen, Niels, D'Souza, Mark, Bernal, Axel, Mazur, Mikhail, Goltsman, Eugene, Selkov, Eugene, Elzer, Philip H., Hagius, Sue, O'Callaghan, David, Letesson, Jean-Jacques, Haselkorn, Robert, Kyrpides, Nikos, Overbeek, Ross

“…Brucella melitensis is a facultative intracellular bacterial pathogen that causes abortion in goats and sheep and Malta fever in humans. The genome of B…”
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Towards microbial data integration by Larsen, N, Overbeek, R, Pramanik, S, Schmidt, T M, Selkov, E E, Strunk, O, Tiedje, J M, Urbance, J W

“…There are currently 100-200 microbiology-related databases in existence, although it is impossible to find answers to queries that span even a few of these…”
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Metabolic modeling of microbial strains in silico by Covert, Markus W., Schilling, Christophe H., Famili, Iman, Edwards, Jeremy S., Goryanin, Igor I., Selkov, Evgeni, Palsson, Bernhard O.

“…The large volume of genome-scale data that is being produced and made available in databases on the World Wide Web is demanding the development of integrated…”
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The ERGO genome analysis and discovery system by Overbeek, Ross, Larsen, Niels, Walunas, Theresa, D'Souza, Mark, Pusch, Gordon, Selkov, Jr, Eugene, Liolios, Konstantinos, Joukov, Viktor, Kaznadzey, Denis, Anderson, Iain, Bhattacharyya, Anamitra, Burd, Henry, Gardner, Warren, Hanke, Paul, Kapatral, Vinayak, Mikhailova, Natalia, Vasieva, Olga, Osterman, Andrei, Vonstein, Veronika, Fonstein, Michael, Ivanova, Natalia, Kyrpides, Nikos

“…The ERGO (http://ergo.integratedgenomics.com/ERGO/) genome analysis and discovery suite is an integration of biological data from genomics, biochemistry,…”
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Parametric resonance and amplification in excitable membranes. The Hodgkin-Huxley model by Markevich, N I, Sel'kov, E E

“…It has previously been shown by different investigators that the excitable membrane shows a resonant sensitivity to periodic external perturbations, but its…”
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Polyglucose content in the cell and the rate of glucose consumption during synchronous growth of Escherichia coli by Planutis, K S, Planutiene, M V, Lazareva, A V, Sel'kov, E E, Evtodienko YuV

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Flux regulation in glycogen-induced oscillatory glycolysis in cell-free extracts of Saccharomyces carlsbergensis by Jonnalagadda, S B, Becker, J U, Sel'kov, E E, Betz, A

“…To localise the controlling point of the glycolytic system, the temporal changes in concentrations of glycolytic intermediates have been analysed after…”
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Functional Analysis of Gapped Microbial Genomes: Amino Acid Metabolism of Thiobacillus ferrooxidans by Selkov, Evgeni, Overbeek, Ross, Kogan, Yakov, Chu, Lien, Vonstein, Veronika, Holmes, David, Silver, Simon, Haselkorn, Robert, Fonstein, Michael

“…A gapped genome sequence of the biomining bacterium Thiobacillus ferrooxidans strain ATCC23270 was assembled from sheared DNA fragments (3.2-times coverage)…”
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Electronomicroscopic data on the effect of penicillin on gonococci by SELKOV, E A

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Mathematical model of carbohydrate energy metabolism. Interaction between glycolysis, the Krebs cycle and the H-transporting shuttles at varying ATPase load by Dynnik, V V, Khaĭnrikh, R, Sel'kov, E E

“…A simple mathematical model for carbohydrate energy metabolism based on the stoichiometic structure of glycolysis, the Krebs cycle and oxidative…”
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