Search Results - "Sekhon, Rajandeep S."

Genome-wide atlas of transcription during maize development by Sekhon, Rajandeep S, Lin, Haining, Childs, Kevin L, Hansey, Candice N, Robin Buell, C, de Leon, Natalia, Kaeppler, Shawn M

“…Maize is an important model species and a major constituent of human and animal diets. It has also emerged as a potential feedstock and model system for…”
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Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays by Sekhon, Rajandeep S, Briskine, Roman, Hirsch, Candice N, Myers, Chad L, Springer, Nathan M, Buell, C Robin, de Leon, Natalia, Kaeppler, Shawn M

“…Transcriptome analysis is a valuable tool for identification and characterization of genes and pathways underlying plant growth and development. We previously…”
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An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development by Stelpflug, Scott C., Sekhon, Rajandeep S., Vaillancourt, Brieanne, Hirsch, Candice N., Buell, C. Robin, Leon, Natalia, Kaeppler, Shawn M.

“…Comprehensive and systematic transcriptome profiling provides valuable insight into biological and developmental processes that occur throughout the life cycle…”
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Maize HapMap2 identifies extant variation from a genome in flux by Chia, Jer-Ming, Song, Chi, Bradbury, Peter J, Costich, Denise, de Leon, Natalia, Doebley, John, Elshire, Robert J, Gaut, Brandon, Geller, Laura, Glaubitz, Jeffrey C, Gore, Michael, Guill, Kate E, Holland, Jim, Hufford, Matthew B, Lai, Jinsheng, Li, Meng, Liu, Xin, Lu, Yanli, McCombie, Richard, Nelson, Rebecca, Poland, Jesse, Prasanna, Boddupalli M, Pyhäjärvi, Tanja, Rong, Tingzhao, Sekhon, Rajandeep S, Sun, Qi, Tenaillon, Maud I, Tian, Feng, Wang, Jun, Xu, Xun, Zhang, Zhiwu, Kaeppler, Shawn M, Ross-Ibarra, Jeffrey, McMullen, Michael D, Buckler, Edward S, Zhang, Gengyun, Xu, Yunbi, Ware, Doreen

“…The nucleotide diversity present in maize exceeds that in humans by an order of magnitude, and it has been challenging to characterize the high levels of…”
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Marker density and read depth for genotyping populations using genotyping-by-sequencing by Beissinger, Timothy M, Hirsch, Candice N, Sekhon, Rajandeep S, Foerster, Jillian M, Johnson, James M, Muttoni, German, Vaillancourt, Brieanne, Buell, C Robin, Kaeppler, Shawn M, de Leon, Natalia

“…Genotyping-by-sequencing (GBS) approaches provide low-cost, high-density genotype information. However, GBS has unique technical considerations, including a…”
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Diverse maize hybrids are structurally inefficient at resisting wind induced bending forces that cause stalk lodging by Stubbs, Christopher J, Seegmiller, Kate, McMahan, Christopher, Sekhon, Rajandeep S, Robertson, Daniel J

“…Stalk lodging (breaking of agricultural plant stalks prior to harvest) results in millions of dollars in lost revenue each year. Despite a growing body of…”
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Salinity stress tolerance prediction for biomass‐related traits in maize (Zea mays L.) using genome‐wide markers by Singh, Vishal, Krause, Margaret, Sandhu, Devinder, Sekhon, Rajandeep S., Kaundal, Amita

“…Maize (Zea mays L.) is the third most important cereal crop after rice (Oryza sativa) and wheat (Triticum aestivum). Salinity stress significantly affects…”
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Cross-sectional geometry predicts failure location in maize stalks by Stubbs, Christopher J, McMahan, Christopher S, Tabaracci, Kaitlin, Kunduru, Bharath, Sekhon, Rajandeep S, Robertson, Daniel J

“…Stalk lodging (breaking of agricultural plant stalks prior to harvest) is a multi-billion dollar a year problem. Stalk lodging occurs when high winds induce…”
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Transcriptional and Metabolic Analysis of Senescence Induced by Preventing Pollination in Maize by Sekhon, Rajandeep S., Childs, Kevin L., Santoro, Nicholas, Foster, Cliff E., Buell, C. Robin, de Leon, Natalia, Kaeppler, Shawn M.

“…Transcriptional and metabolic changes were evaluated during senescence induced by preventing pollination in the B73 genotype of maize (Zea mays). Accumulation…”
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Biomechanical phenotyping pipeline for stalk lodging resistance in maize by Tabaracci, Kaitlin, Bokros, Norbert T., Oduntan, Yusuf, Kunduru, Bharath, DeKold, Joseph, Mengistie, Endalkachew, McDonald, Armando, Stubbs, Christopher J., Sekhon, Rajandeep S., DeBolt, Seth, Robertson, Daniel J.

“…Stalk lodging (structural failure crops prior to harvest) significantly reduces annual yields of vital grain crops. The lack of standardized, high throughput…”
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2020-2021 field seasons of Maize GxE project within the Genomes to Fields Initiative by Lima, Dayane Cristina, Aviles, Alejandro Castro, Alpers, Ryan Timothy, Perkins, Alden, Schoemaker, Dylan L, Costa, Martin, Michel, Kathryn J, Kaeppler, Shawn, Ertl, David, Romay, Maria Cinta, Gage, Joseph L, Holland, James, Beissinger, Timothy, Bohn, Martin, Buckler, Edward, Edwards, Jode, Flint-Garcia, Sherry, Gore, Michael A, Hirsch, Candice N, Knoll, Joseph E, McKay, John, Minyo, Richard, Murray, Seth C, Schnable, James, Sekhon, Rajandeep S, Singh, Maninder P, Sparks, Erin E, Thomison, Peter, Thompson, Addie, Tuinstra, Mitchell, Wallace, Jason, Washburn, Jacob D, Weldekidan, Teclemariam, Xu, Wenwei, de Leon, Natalia

“…Abstract Objectives This release note describes the Maize GxE project datasets within the Genomes to Fields (G2F) Initiative. The Maize GxE project aims to…”
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Sorghum bicolor L. Stalk Stiffness Is Marginally Affected by Time of Day under Field Conditions by Bokros, Norbert, Woomer, Joseph, Schroeder, Zoe, Kunduru, Bharath, Brar, Manwinder S, Seegmiller, Will, Stork, Jozsef, McMahan, Christopher, Robertson, Daniel J, Sekhon, Rajandeep S, DeBolt, Seth

“…This study sought to better understand how time of day (ToD) or turgor pressure might affect the flexural stiffness of sweet sorghum stalks and potentially…”
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Genomes to Fields 2022 Maize genotype by Environment Prediction Competition by Lima, Dayane Cristina, Washburn, Jacob D, Varela, José Ignacio, Chen, Qiuyue, Gage, Joseph L, Romay, Maria Cinta, Holland, James, Ertl, David, Lopez-Cruz, Marco, Aguate, Fernando M, de Los Campos, Gustavo, Kaeppler, Shawn, Beissinger, Timothy, Bohn, Martin, Buckler, Edward, Edwards, Jode, Flint-Garcia, Sherry, Gore, Michael A, Hirsch, Candice N, Knoll, Joseph E, McKay, John, Minyo, Richard, Murray, Seth C, Ortez, Osler A, Schnable, James C, Sekhon, Rajandeep S, Singh, Maninder P, Sparks, Erin E, Thompson, Addie, Tuinstra, Mitchell, Wallace, Jason, Weldekidan, Teclemariam, Xu, Wenwei, de Leon, Natalia

“…The Genomes to Fields (G2F) 2022 Maize Genotype by Environment (GxE) Prediction Competition aimed to develop models for predicting grain yield for the 2022…”
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Genetic Diversity of a Maize Association Population with Restricted Phenology by Hansey, Candice N, Johnson, James M, Sekhon, Rajandeep S, Kaeppler, Shawn M, De Leon, Natalia

“…Association analysis to identify genes and alleles underlying quantitative genetic variation is growing in value as the density of genotypic data increases…”
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Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing by Hansey, Candice N, Vaillancourt, Brieanne, Sekhon, Rajandeep S, de Leon, Natalia, Kaeppler, Shawn M, Buell, C Robin

“…Maize is rich in genetic and phenotypic diversity. Understanding the sequence, structural, and expression variation that contributes to phenotypic diversity…”
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2018-2019 field seasons of the Maize Genomes to Fields (G2F) G x E project by Lima, Dayane Cristina, Aviles, Alejandro Castro, Alpers, Ryan Timothy, McFarland, Bridget A, Kaeppler, Shawn, Ertl, David, Romay, Maria Cinta, Gage, Joseph L, Holland, James, Beissinger, Timothy, Bohn, Martin, Buckler, Edward, Edwards, Jode, Flint-Garcia, Sherry, Hirsch, Candice N, Hood, Elizabeth, Hooker, David C, Knoll, Joseph E, Kolkman, Judith M, Liu, Sanzhen, McKay, John, Minyo, Richard, Moreta, Danilo E, Murray, Seth C, Nelson, Rebecca, Schnable, James C, Sekhon, Rajandeep S, Singh, Maninder P, Thomison, Peter, Thompson, Addie, Tuinstra, Mitchell, Wallace, Jason, Washburn, Jacob D, Weldekidan, Teclemariam, Wisser, Randall J, Xu, Wenwei, de Leon, Natalia

“…This report provides information about the public release of the 2018-2019 Maize G X E project of the Genomes to Fields (G2F) Initiative datasets. G2F is an…”
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Utility of RNA Sequencing for Analysis of Maize Reproductive Transcriptomes by Davidson, Rebecca M., Hansey, Candice N., Gowda, Malali, Childs, Kevin L., Lin, Haining, Vaillancourt, Brieanne, Sekhon, Rajandeep S., Leon, Natalia, Kaeppler, Shawn M., Jiang, Ning, Buell, C. Robin

“…Transcriptome sequencing is a powerful method for studying global expression patterns in large, complex genomes. Evaluation of sequence‐based expression…”
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Maize Unstable factor for orange1 is required for maintaining silencing associated with paramutation at the pericarp color1 and booster1 loci by Sekhon, Rajandeep S, Wang, Po-Hao, Sidorenko, Lyudmila, Chandler, Vicki L, Chopra, Surinder

“…To understand the molecular mechanisms underlying paramutation, we examined the role of Unstable factor for orange1 (Ufo1) in maintaining paramutation at the…”
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Sugar partitioning and source–sink interaction are key determinants of leaf senescence in maize by Kumar, Rohit, Bishop, Eugene, Bridges, William C., Tharayil, Nishanth, Sekhon, Rajandeep S.

“…Source–sink communication is one of the key regulators of senescence; however, the mechanisms underlying such regulation are largely unknown. We analysed…”
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Genome-wide identification, expression profiling, and network analysis of AT-hook gene family in maize by Bishop, Eugene H., Kumar, Rohit, Luo, Feng, Saski, Christopher, Sekhon, Rajandeep S.

“…AT-hook motif nuclear localized (AHL) genes have diverse but poorly understood biological functions. We identified and analyzed 37 AHL genes in maize. We also…”
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