Search Results - "Schultz, Jorg"

ITS2 Database IV: Interactive taxon sampling for internal transcribed spacer 2 based phylogenies by Koetschan, Christian, Hackl, Thomas, Müller, Tobias, Wolf, Matthias, Förster, Frank, Schultz, Jörg

“…[Display omitted] ► New ITS2 Workbench integrates taxon sampling, structure prediction, alignment and tree reconstruction into one workflow. ► ITS2 database…”
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ProfDistS: (profile-) distance based phylogeny on sequence—structure alignments by Wolf, Matthias, Ruderisch, Benjamin, Dandekar, Thomas, Schultz, Jörg, Müller, Tobias

“…Motivation: The Profile Neighbor Joining (PNJ) algorithm as implemented in the software ProfDist is computationally efficient in reconstructing very large…”
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SMART 4.0: towards genomic data integration by Letunic, Ivica, Copley, Richard R., Schmidt, Steffen, Ciccarelli, Francesca D., Doerks, Tobias, Schultz, Jörg, Ponting, Chris P., Bork, Peer

“…SMART (Simple Modular Architecture Research Tool) is a web tool (http://smart.embl.de/) for the identification and annotation of protein domains, and provides…”
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Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees by Keller, Alexander, Förster, Frank, Müller, Tobias, Dandekar, Thomas, Schultz, Jörg, Wolf, Matthias

“…In several studies, secondary structures of ribosomal genes have been used to improve the quality of phylogenetic reconstructions. An extensive evaluation of…”
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Word formation is aware of morpheme family size by Keller, Daniela Barbara, Schultz, Jörg

“…Words are built from smaller meaning bearing parts, called morphemes. As one word can contain multiple morphemes, one morpheme can be present in different…”
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Protein interaction networks--more than mere modules by Pinkert, Stefan, Schultz, Jörg, Reichardt, Jörg

“…It is widely believed that the modular organization of cellular function is reflected in a modular structure of molecular networks. A common view is that a…”
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SMART, a Simple Modular Architecture Research Tool: Identification of Signaling Domains by Schultz, Jorg, Milpetz, Frank, Bork, Peer, Ponting, Chris P.

“…Accurate multiple alignments of 86 domains that occur in signaling proteins have been constructed and used to provide a Web-based tool (SMART: simple modular…”
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Computational integration of genomic traits into 16S rDNA microbiota sequencing studies by Keller, Alexander, Horn, Hannes, Förster, Frank, Schultz, Jörg

“…Molecular sequencing techniques help to understand microbial biodiversity with regard to species richness, assembly structure and function. In this context,…”
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Functional organization of the yeast proteome by systematic analysis of protein complexes by Gavin, Anne-Claude, Superti-Furga, Giulio, Bösche, Markus, Krause, Roland, Grandi, Paola, Marzioch, Martina, Bauer, Andreas, Schultz, Jörg, Rick, Jens M, Michon, Anne-Marie, Cruciat, Cristina-Maria, Remor, Marita, Höfert, Christian, Schelder, Malgorzata, Brajenovic, Miro, Ruffner, Heinz, Merino, Alejandro, Klein, Karin, Hudak, Manuela, Dickson, David, Rudi, Tatjana, Gnau, Volker, Bauch, Angela, Bastuck, Sonja, Huhse, Bettina, Leutwein, Christina, Heurtier, Marie-Anne, Copley, Richard R, Edelmann, Angela, Querfurth, Erich, Rybin, Vladimir, Drewes, Gerard, Raida, Manfred, Bouwmeester, Tewis, Bork, Peer, Seraphin, Bertrand, Kuster, Bernhard, Neubauer, Gitte

“…Most cellular processes are carried out by multiprotein complexes. The identification and analysis of their components provides insight into how the ensemble…”
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ISAAC - InterSpecies Analysing Application using Containers by Baier, Herbert, Schultz, Jörg

“…Information about genes, transcripts and proteins is spread over a wide variety of databases. Different tools have been developed using these databases to…”
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Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets by Pandey, Akhilesh, Gandhi, T K B, Zhong, Jun, Mathivanan, Suresh, Karthick, L, Chandrika, K N, Mohan, S Sujatha, Sharma, Salil, Pinkert, Stefan, Nagaraju, Shilpa, Periaswamy, Balamurugan, Mishra, Goparani, Nandakumar, Kannabiran, Shen, Beiyi, Deshpande, Nandan, Nayak, Rashmi, Sarker, Malabika, Boeke, Jef D, Parmigiani, Giovanni, Schultz, Jörg, Bader, Joel S

“…We present the first analysis of the human proteome with regard to interactions between proteins. We also compare the human interactome with the available…”
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The bilaterian roots of cordon-bleu by Schultz, Jörg, Terhoeven, Niklas

“…The actin cytoskeleton is essential for many physiological processes of eukaryotic cells. The emergence of new actin fibers is initiated by actin nucleators…”
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ALVIS: interactive non-aggregative visualization and explorative analysis of multiple sequence alignments by Schwarz, Roland F, Tamuri, Asif U, Kultys, Marek, King, James, Godwin, James, Florescu, Ana M, Schultz, Jörg, Goldman, Nick

“…Sequence Logos and its variants are the most commonly used method for visualization of multiple sequence alignments (MSAs) and sequence motifs. They provide…”
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SMART: a web-based tool for the study of genetically mobile domains by Schultz, J, Copley, R R, Doerks, T, Ponting, C P, Bork, P

“…SMART (a Simple Modular Architecture Research Tool) allows the identification and annotation of genetically mobile domains and the analysis of domain…”
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Exonization of active mouse L1s: a driver of transcriptome evolution? by Zemojtel, Tomasz, Penzkofer, Tobias, Schultz, Jörg, Dandekar, Thomas, Badge, Richard, Vingron, Martin

“…Long interspersed nuclear elements (LINE-1s, L1s) have been recently implicated in the regulation of mammalian transcriptomes. Here, we show that members of…”
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Modelling interaction sites in protein domains with interaction profile hidden Markov models by Friedrich, Torben, Pils, Birgit, Dandekar, Thomas, Schultz, Jörg, Müller, Tobias

“…Motivation: Due to the growing number of completely sequenced genomes, functional annotation of proteins becomes a more and more important issue. Here, we…”
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proovread: large-scale high-accuracy PacBio correction through iterative short read consensus by Hackl, Thomas, Hedrich, Rainer, Schultz, Jörg, Förster, Frank

“…Today, the base code of DNA is mostly determined through sequencing by synthesis as provided by the Illumina sequencers. Although highly accurate, resulting…”
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Evolutionary flexibility of protein complexes by Seidl, Michael F, Schultz, Jörg

“…Proteins play a key role in cellular life. They do not act alone but are organised in complexes. Throughout the life of a cell, complexes are dynamic in their…”
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Genome Expression Pathway Analysis Tool--analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context by Weniger, Markus, Engelmann, Julia C, Schultz, Jörg

“…Regulation of gene expression is relevant to many areas of biology and medicine, in the study of treatments, diseases, and developmental stages. Microarrays…”
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SMART: identification and annotation of domains from signalling and extracellular protein sequences by Ponting, Chris P., Schultz, Jörg, Milpetz, Frank, Bork, Peer

“…SMART is a simple modular architecture research tool and database that provides domain identification and annotation on the WWW…”
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