Search Results - "Schultheiss, Sebastian J"

Accurate machine learning-based germination detection, prediction and quality assessment of three grain crops by Genze, Nikita, Bharti, Richa, Grieb, Michael, Schultheiss, Sebastian J, Grimm, Dominik G

“…Assessment of seed germination is an essential task for seed researchers to measure the quality and performance of seeds. Usually, seed assessments are done…”
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A comparison of classical and machine learning-based phenotype prediction methods on simulated data and three plant species by John, Maura, Haselbeck, Florian, Dass, Rupashree, Malisi, Christoph, Ricca, Patrizia, Dreischer, Christian, Schultheiss, Sebastian J., Grimm, Dominik G.

“…Genomic selection is an integral tool for breeders to accurately select plants directly from genotype data leading to faster and more resource-efficient…”
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Transcriptional Control of a Plant Stem Cell Niche by Busch, Wolfgang, Miotk, Andrej, Ariel, Federico D., Zhao, Zhong, Forner, Joachim, Daum, Gabor, Suzaki, Takuya, Schuster, Christoph, Schultheiss, Sebastian J., Leibfried, Andrea, Haubeiß, Silke, Ha, Nati, Chan, Raquel L., Lohmann, Jan U.

“…Despite the independent evolution of multicellularity in plants and animals, the basic organization of their stem cell niches is remarkably similar. Here, we…”
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Interpretable machine learning decodes soil microbiome's response to drought stress by Hagen, Michelle, Dass, Rupashree, Westhues, Cathy, Blom, Jochen, Schultheiss, Sebastian J, Patz, Sascha

“…Extreme weather events induced by climate change, particularly droughts, have detrimental consequences for crop yields and food security. Concurrently, these…”
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MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant whole-genome bisulfite sequencing data by Hüther, Patrick, Hagmann, Jörg, Nunn, Adam, Kakoulidou, Ioanna, Pisupati, Rahul, Langenberger, David, Weigel, Detlef, Johannes, Frank, Schultheiss, Sebastian J, Becker, Claude

“…Whole-genome bisulfite sequencing (WGBS) is the standard method for profiling DNA methylation at single-nucleotide resolution. Different tools have been…”
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Learn from the best by Bernard, Virginie, Schultheiss, Sebastian J, Michaut, Magali

“…What is more inspiring than a discussion with the leading scientists in your field? As a student or a young researcher, you have likely been influenced by…”
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Ten simple rules for providing a scientific Web resource by Schultheiss, Sebastian J

“…  The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Changing the Web address of an…”
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Persistence and availability of Web services in computational biology by Schultheiss, Sebastian J, Münch, Marc-Christian, Andreeva, Gergana D, Rätsch, Gunnar

“…We have conducted a study on the long-term availability of bioinformatics Web services: an observation of 927 Web services published in the annual Nucleic…”
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Hormonal control of the shoot stem-cell niche by Lohmann, Jan U, Zhao, Zhong, Andersen, Stig U, Ljung, Karin, Dolezal, Karel, Miotk, Andrej, Schultheiss, Sebastian J

“…The classic phytohormones cytokinin and auxin play essential roles in the maintenance of stem-cell systems embedded in shoot and root meristems, and exhibit…”
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Crossing borders for science by Schultheiss, Sebastian J, Yang, Joshua SungWoo, Iwasaki, Wataru, Lin, Shu-Hsi, Jean, Angela, Michaut, Magali

“…Exchanging ideas with like-minded, enthusiastic people interested in the same topic is crucial for the advancement of a scientist's career. Several Regional…”
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KIRMES: kernel-based identification of regulatory modules in euchromatic sequences by Schultheiss, Sebastian J., Busch, Wolfgang, Lohmann, Jan U., Kohlbacher, Oliver, Rätsch, Gunnar

“…Motivation: Understanding transcriptional regulation is one of the main challenges in computational biology. An important problem is the identification of…”
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De novo assembly of the cattle reference genome with single-molecule sequencing by Rosen, Benjamin D, Bickhart, Derek M, Schnabel, Robert D, Koren, Sergey, Elsik, Christine G, Tseng, Elizabeth, Rowan, Troy N, Low, Wai Y, Zimin, Aleksey, Couldrey, Christine, Hall, Richard, Li, Wenli, Rhie, Arang, Ghurye, Jay, McKay, Stephanie D, Thibaud-Nissen, Françoise, Hoffman, Jinna, Murdoch, Brenda M, Snelling, Warren M, McDaneld, Tara G, Hammond, John A, Schwartz, John C, Nandolo, Wilson, Hagen, Darren E, Dreischer, Christian, Schultheiss, Sebastian J, Schroeder, Steven G, Phillippy, Adam M, Cole, John B, Van Tassell, Curtis P, Liu, George, Smith, Timothy P L, Medrano, Juan F

“…Abstract Background Major advances in selection progress for cattle have been made following the introduction of genomic tools over the past 10–12 years. These…”
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Multiple reference genomes and transcriptomes for Arabidopsis thaliana by Gan, Xiangchao, Stegle, Oliver, Behr, Jonas, Steffen, Joshua G., Drewe, Philipp, Hildebrand, Katie L., Lyngsoe, Rune, Schultheiss, Sebastian J., Osborne, Edward J., Sreedharan, Vipin T., Kahles, André, Bohnert, Regina, Jean, Géraldine, Derwent, Paul, Kersey, Paul, Belfield, Eric J., Harberd, Nicholas P., Kemen, Eric, Toomajian, Christopher, Kover, Paula X., Clark, Richard M., Rätsch, Gunnar, Mott, Richard

“…Genetic differences between Arabidopsis thaliana accessions underlie the plant’s extensive phenotypic variation, and until now these have been interpreted…”
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KIRMES: kernel-based identification of regulatory modules in euchromatic sequences by Schultheiss, Sebastian J, Busch, Wolfgang, Lohmann, Jan, Kohlbacher, Oliver, RAOtsch, Gunnar

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Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis by Sreedharan, Vipin T., Schultheiss, Sebastian J., Jean, Géraldine, Kahles, André, Bohnert, Regina, Drewe, Philipp, Mudrakarta, Pramod, Görnitz, Nico, Zeller, Georg, Rätsch, Gunnar

“…We present Oqtans, an open-source workbench for quantitative transcriptome analysis, that is integrated in Galaxy. Its distinguishing features include…”
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Kernel-based identification of regulatory modules by Schultheiss, Sebastian J

“…The challenge of identifying cis-regulatory modules (CRMs) is an important milestone for the ultimate goal of understanding transcriptional regulation in…”
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Ten Simple Rules for Providing a Scientific Web Resource: e1001126 by Schultheiss, Sebastian J

“…The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Changing the Web address of an…”
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Learn from the Best: e1003645 by Bernard, Virginie, Schultheiss, Sebastian J, Michaut, Magali

“…What is more inspiring than a discussion with the leading scientists in your field? As a student or a young researcher, you have likely been influenced by…”
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Crossing Borders for Science: e1003519 by Schultheiss, Sebastian J, Yang, Joshua SungWoo, Iwasaki, Wataru, Lin, Shu-Hsi, Jean, Angela, Michaut, Magali

“…Exchanging ideas with like-minded, enthusiastic people interested in the same topic is crucial for the advancement of a scientist's career. Several Regional…”
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Oqtans: a multifunctional workbench for RNA-seq data analysis by Sreedharan, Vipin T, Schultheiss, Sebastian J, Jean, Géraldine, Kahles, André, Bohnert, Regina, Drewe, Philipp, Mudrakarta, Pramod, Görnitz, Nico, Zeller, Georg, Rätsch, Gunnar

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