Search Results - "Schriml, L. M."

Mutational spectra of PTEN/MMAC1 gene : A tumor suppressor with lipid phosphatase activity by IQBAL UNNISA ALI, SCHRIML, L. M, DEAN, M

“…PTEN/MMAC1 (phosphatase, tensin homologue/mutated in multiple advanced cancers) is a tumor suppressor protein that has sequence homology with dual-specificity…”
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A human placenta-specific ATP-binding cassette gene (ABCP) on chromosome 4q22 that is involved in multidrug resistance by ALLIKMETS, R, SCHRIML, L. M, HUTCHINSON, A, ROMANO-SPICA, V, DEAN, M

“…We characterized a new human ATP-binding cassette (ABC) transporter gene that is highly expressed in the placenta. The gene, ABCP, produces two transcripts…”
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Disease Ontology: a backbone for disease semantic integration by Schriml, Lynn Marie, Arze, Cesar, Nadendla, Suvarna, Chang, Yu-Wei Wayne, Mazaitis, Mark, Felix, Victor, Feng, Gang, Kibbe, Warren Alden

“…The Disease Ontology (DO) database (http://disease-ontology.org) represents a comprehensive knowledge base of 8043 inherited, developmental and acquired human…”
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Functional annotation of a full-length mouse cDNA collection by Sakamoto, N, Batalov, S, Izawa, M, Kohtsuki, S, Sato, K, Schönbach, C, Kasukawa, T, Shibata, K, Okido, T, Baldarelli, R, Matsuda, H, Matsuo, Y, Itoh, M, Gissi, C, Saito, R, Hume, D. A, Arakawa, T, Gojobori, T, Kochiwa, H, Boffelli, D, Kawaji, H, Aizawa, K, Storch, K.-F, Fukuda, S, Ring, B, Kadota, K, Rodriguez, I, Wynshaw-Boris, A, Saito, T, Kuehl, P, Wagner, L, Fukunishi, Y, Brownstein, M. J, Washio, T, Okazaki, Y, Fleischmann, W, Ringwald, M, Mazzarelli, J, Mombaerts, P, Sasaki, H, Schriml, L. M, Suzuki, H, Bult, C, King, B, Kondo, S, Carninci, P, Wilming, L, Weitz, C, Lee, N. H, Seya, T, Nishi, K, Pesole, G, Furuno, M, Nikaido, I, Toyo-oka, K, Hayashizaki, Y, Quackenbush, J, Wang, K. H, Bono, H, Hasegawa, Y, Barsh, G, Gariboldi, M, Gustincich, S, Adachi, J, Ishii, Y, Mashima, J, Hofmann, M, Ashburner, M, Shibata, Y, Yoshida, K, Lyons, P, Lewis, S, Shinagawa, A, Hill, D, Kawai, J, Tomita, M, Marchionni, L, Kiyosawa, H, Staubli, F, Suzuki, R, Bojunga, N, Nordone, P, Fletcher, C, Whittaker, C, Yoshino, M, Konno, H, Sakai, K, de Bonaldo, M. F, Hara, A, Casavant, T, Aono, H, Fujita, M, Yamanaka, I, Blake, J, Gaasterland, T, Kamiya, M

“…The RIKEN Mouse Gene Encyclopaedia Project, a systematic approach to determining the full coding potential of the mouse genome, involves collection and…”
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Database resources of the National Center for Biotechnology Information by Wheeler, D L, Church, D M, Lash, A E, Leipe, D D, Madden, T L, Pontius, J U, Schuler, G D, Schriml, L M, Tatusova, T A, Wagner, L, Rapp, B A

“…In addition to maintaining the GenBank nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides data analysis and…”
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Community-Driven Metadata Standards for Agricultural Microbiome Research by Dundore-Arias, J. P., Eloe-Fadrosh, E. A., Schriml, L. M., Beattie, G. A., Brennan, F. P., Busby, P. E., Calderon, R. B., Castle, S. C., Emerson, J. B., Everhart, S. E., Eversole, K., Frost, K. E., Herr, J. R., Huerta, A. I., Iyer-Pascuzzi, A. S., Kalil, A. K., Leach, J. E., Leonard, J., Maul, J. E., Prithiviraj, B., Potrykus, M., Redekar, N. R., Rojas, J. A., Silverstein, K. A. T., Tomso, D. J., Tringe, S. G., Vinatzer, B. A., Kinkel, L. L.

“…Accelerating the pace of microbiome science to enhance crop productivity and agroecosystem health will require transdisciplinary studies, comparisons among…”
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Database resources of the National Center for Biotechnology by Wheeler, David L., Church, Deanna M., Federhen, Scott, Lash, Alex E., Madden, Thomas L., Pontius, Joan U., Schuler, Gregory D., Schriml, Lynn M., Sequeira, Edwin, Tatusova, Tatiana A., Wagner, Lukas

“…In addition to maintaining the GenBank(R) nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides data analysis and…”
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Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs by Okazaki, Y, Furuno, M, Kasukawa, T, Adachi, J, Bono, H, Kondo, S, Nikaido, I, Osato, N, Saito, R, Suzuki, H, Yamanaka, I, Kiyosawa, H, Yagi, K, Tomaru, Y, Hasegawa, Y, Nogami, A, Schönbach, C, Gojobori, T, Baldarelli, R, Hill, D P, Bult, C, Hume, D A, Quackenbush, J, Schriml, L M, Kanapin, A, Matsuda, H, Batalov, S, Beisel, K W, Blake, J A, Bradt, D, Brusic, V, Chothia, C, Corbani, L E, Cousins, S, Dalla, E, Dragani, T A, Fletcher, C F, Forrest, A, Frazer, K S, Gaasterland, T, Gariboldi, M, Gissi, C, Godzik, A, Gough, J, Grimmond, S, Gustincich, S, Hirokawa, N, Jackson, I J, Jarvis, E D, Kanai, A, Kawaji, H, Kawasawa, Y, Kedzierski, R M, King, B L, Konagaya, A, Kurochkin, I V, Lee, Y, Lenhard, B, Lyons, P A, Maglott, D R, Maltais, L, Marchionni, L, McKenzie, L, Miki, H, Nagashima, T, Numata, K, Okido, T, Pavan, W J, Pertea, G, Pesole, G, Petrovsky, N, Pillai, R, Pontius, J U, Qi, D, Ramachandran, S, Ravasi, T, Reed, J C, Reed, D J, Reid, J, Ring, B Z, Ringwald, M, Sandelin, A, Schneider, C, Semple, C A M, Setou, M, Shimada, K, Sultana, R, Takenaka, Y, Taylor, M S, Teasdale, R D, Tomita, M, Verardo, R, Wagner, L, Wahlestedt, C, Wang, Y, Watanabe, Y, Wells, C, Wilming, L G, Wynshaw-Boris, A, Yanagisawa, M

“…Only a small proportion of the mouse genome is transcribed into mature messenger RNA transcripts. There is an international collaborative effort to identify…”
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Tyramide signal amplification (TSA)-FISH applied to mapping PCR-labeled probes less than 1 kb in size by Schriml, L M, Padilla-Nash, H M, Coleman, A, Moen, P, Nash, W G, Menninger, J, Jones, G, Ried, T, Dean, M

“…Tyramide signal amplification (TSA)-FISH was used to map one mouse and two human DNA probes of less than 1 kb in size. The two human probes were 319 and 608…”
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An ATP-binding cassette gene (ABCG5) from the ABCG (White) gene subfamily maps to human chromosome 2p21 in the region of the Sitosterolemia locus by Shulenin, S, Schriml, L M, Remaley, A T, Fojo, S, Brewer, B, Allikmets, R, Dean, M

“…We characterized a new human ATP-binding cassette (ABC) transporter gene that is highly expressed in the liver. The gene, ABCG5, contains 13 exons and encodes…”
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Comparative analysis of the promoter structure and genomic organization of the human and mouse ABCA7 gene encoding a novel ABCA transporter by Broccardo, C, Osorio, J, Luciani, M F, Schriml, L M, Prades, C, Shulenin, S, Arnould, I, Naudin, L, Lafargue, C, Rosier, M, Jordan, B, Mattei, M G, Dean, M, Denèfle, P, Chimini, G

“…We report here the genomic and transcriptional characterization in mouse and man of a novel transporter of the ABCA subclass, named ABCA7. As it is the case…”
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Database resources of the National Center for Biotechnology Information by Wheeler, David L., Barrett, Tanya, Benson, Dennis A., Bryant, Stephen H., Canese, Kathi, Church, Deanna M., DiCuccio, Michael, Edgar, Ron, Federhen, Scott, Helmberg, Wolfgang, Kenton, David L., Khovayko, Oleg, Lipman, David J., Madden, Thomas L., Maglott, Donna R., Ostell, James, Pontius, Joan U., Pruitt, Kim D., Schuler, Gregory D., Schriml, Lynn M., Sequeira, Edwin, Sherry, Steven T., Sirotkin, Karl, Starchenko, Grigory, Suzek, Tugba O., Tatusov, Roman, Tatusova, Tatiana A., Wagner, Lukas, Yaschenko, Eugene

“…In addition to maintaining the GenBank(R) nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides data retrieval…”
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GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database by Schriml, Lynn M, Arze, Cesar, Nadendla, Suvarna, Ganapathy, Anu, Felix, Victor, Mahurkar, Anup, Phillippy, Katherine, Gussman, Aaron, Angiuoli, Sam, Ghedin, Elodie, White, Owen, Hall, Neil

“…The Gemina system (http://gemina.igs.umaryland.edu) identifies, standardizes and integrates the outbreak metadata for the breadth of NIAID category A-C viral…”
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Use of denaturing HPLC to map human and murine genes and to validate single-nucleotide polymorphisms by Schriml, L M, Peterson, R J, Gerrard, B, Dean, M

“…Linkage mapping has been extensively applied in the murine and human genomes. It remains a powerful approach to mapping genes and identifying genetic variants…”
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Database resources of the National Center for Biotechnology Information: 2002 update by Wheeler, David L, Church, Deanna M, Lash, Alex E, Leipe, Detlef D, Madden, Thomas L, Pontius, Joan U, Schuler, Gregory D, Schriml, Lynn M, Tatusova, Tatiana A, Wagner, Lukas, Rapp, Barbara A

“…In addition to maintaining the GenBank nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides data analysis and…”
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Development and evaluation of an automated annotation pipeline and cDNA annotation system by Kasukawa, Takeya, Furuno, Masaaki, Nikaido, Itoshi, Bono, Hidemasa, Hume, David A, Bult, Carol, Hill, David P, Baldarelli, Richard, Gough, Julian, Kanapin, Alexander, Matsuda, Hideo, Schriml, Lynn M, Hayashizaki, Yoshihide, Okazaki, Yasushi, Quackenbush, John

“…Manual curation has long been held to be the "gold standard" for functional annotation of DNA sequence. Our experience with the annotation of more than 20,000…”
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Identification of 18 Mouse ABC Genes and Characterization of the ABC Superfamily in Mus musculus by Schriml, Lynn M., Dean, Michael

“…ATP-binding cassette (ABC) genes encode a family of transport proteins known to be involved in a number of human genetic diseases. In this study, we…”
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An ATP-binding cassette gene (ABCG3) closely related to the multidrug transporter ABCG2 (MXR/ABCP) has an unusual ATP-binding domain by Mickley, L, Jain, P, Miyake, K, Schriml, L M, Rao, K, Fojo, T, Bates, S, Dean, M

“…Abcg3 is unique among ABC genes in not having several highly conserved residues in the A and C domains of the NBF. The Hamster Abcg3 gene contains the same…”
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A Camera Study of Temporal Patterns of Nest Predation in Different Habitats by Picman, Jaroslav, Lynn M. Schriml

“…We examined composition of predator communities, relative importance of individual nest predators, and temporal patterns of nest predation in marsh, old field,…”
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Human disease genes and their cloned mouse orthologs: exploration of the FANTOM2 cDNA sequence data set by Schriml, Lynn M, Hill, David P, Blake, Judith A, Bono, Hidemasa, Wynshaw-Boris, Anthony, Pavan, William J, Ring, Brian Z, Beisel, Kirk, Setou, Mitsutoshi, Okazaki, Yasushi

“…The FANTOM2 cDNA sequence data set is an excellent model to demonstrate the power of large-scale cDNA sequencing, with the goal of providing a full-length…”
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