Search Results - "Schneeberger"

Using next-generation sequencing to isolate mutant genes from forward genetic screens by Schneeberger, Korbinian

“…Key Points Next-generation sequencing enables simultaneous mapping and identification of a causal mutation though sequencing bulk populations of mutant…”
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plotsr: visualizing structural similarities and rearrangements between multiple genomes by Goel, Manish, Schneeberger, Korbinian

“…Third-generation genome sequencing technologies have led to a sharp increase in the number of high-quality genome assemblies. This allows the comparison of…”
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Chromosome-level assemblies of multiple Arabidopsis genomes reveal hotspots of rearrangements with altered evolutionary dynamics by Jiao, Wen-Biao, Schneeberger, Korbinian

“…Despite hundreds of sequenced Arabidopsis genomes, very little is known about the degree of genomic collinearity within single species, due to the low number…”
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plotsr: visualizing structural similarities and rearrangements between multiple genomes by Goel, Manish, Schneeberger, Korbinian

“…Abstract Summary Third-generation genome sequencing technologies have led to a sharp increase in the number of high-quality genome assemblies. This allows the…”
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Proper actions of Grigorchuk groups on a CAT(0) cube complex by Schneeberger, Grégoire

“…In this paper we will present a construction of a CAT(0) cube complex (an infinite cube), on which the uncountable family of Grigorchuk groups G ω act without…”
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Egg excretion patterns of soil-transmitted helminth infections in humans following albendazole-ivermectin and albendazole treatment by Welsche, Sophie, Schneeberger, Pierre H H, Hattendorf, Jan, Sayasone, Somphou, Hürlimann, Eveline, Keiser, Jennifer

“…Control efforts of soil-transmitted helminthiases rely primarily on large scale administration of anthelminthic drugs. The assessment of drug efficacies and…”
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Aryl hydrocarbon receptor agonist indigo protects against obesity-related insulin resistance through modulation of intestinal and metabolic tissue immunity by Lin, Yi-Hsuan, Luck, Helen, Khan, Saad, Schneeberger, Pierre H. H., Tsai, Sue, Clemente-Casares, Xavier, Lei, Helena, Leu, Yann-Lii, Chan, Yi Tao, Chen, Hsing-Yu, Yang, Sien-Hung, Coburn, Bryan, Winer, Shawn, Winer, Daniel A.

“…Background/objectives Low-grade chronic inflammation in visceral adipose tissue and the intestines are important drivers of obesity associated insulin…”
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Validation of a human-serum-based in vitro growth method for drug screening on juvenile development stages of Schistosoma mansoni by Buchter, Valentin, Schneeberger, Pierre H H, Keiser, Jennifer

“…Schistosomiasis affects over 200 million people worldwide but only praziquantel is available for treatment and control. Drug discovery is often based on…”
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Different gut microbial communities correlate with efficacy of albendazole-ivermectin against soil-transmitted helminthiases by Schneeberger, Pierre H. H., Gueuning, Morgan, Welsche, Sophie, Hürlimann, Eveline, Dommann, Julian, Häberli, Cécile, Frey, Jürg E., Sayasone, Somphou, Keiser, Jennifer

“…Soil-transmitted helminth infections represent a large burden with over a quarter of the world’s population at risk. Low cure rates are observed with standard…”
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Life of a liver awaiting transplantation by Schneeberger, Stefan

“…People waiting for a liver transplant can die before an organ is found, or, if one is available but of poor quality, there is a risk of transplant failure. A…”
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SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies by Goel, Manish, Sun, Hequan, Jiao, Wen-Biao, Schneeberger, Korbinian

“…Genomic differences range from single nucleotide differences to complex structural variations. Current methods typically annotate sequence differences ranging…”
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Gut microbiomes of agropastoral children from the Adadle region of Ethiopia reflect their unique dietary habits by Yersin, Simon, Garneau, Julian R., Schneeberger, Pierre H. H., Osman, Kadra Ali, Cercamondi, Colin Ivano, Muhummed, Abdifatah Muktar, Tschopp, Rea, Zinsstag, Jakob, Vonaesch, Pascale

“…The composition and function of the intestinal microbiota are major determinants of human health and are strongly influenced by diet, antibiotic treatment,…”
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A Cheeger-Buser-type inequality on CW complexes by Grégoire Schneeberger

“…We extend the definition of boundary expansion to CW complexes and prove a Cheeger-Buser-type relation between the spectral gap of the Laplacian and the…”
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The tight junction: a multifunctional complex by Schneeberger, Eveline E, Lynch, Robert D

“…Multicellular organisms are separated from the external environment by a layer of epithelial cells whose integrity is maintained by intercellular junctional…”
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The impact of third generation genomic technologies on plant genome assembly by Jiao, Wen-Biao, Schneeberger, Korbinian

“…•Plant genomes are more repetitive and complicate to assemble than vertebrates.•Long-read assembly contigs outperform short-read assembly scaffolds.•Long-range…”
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Investigations on the interplays between Schistosoma mansoni, praziquantel and the gut microbiome by Schneeberger, Pierre H H, Coulibaly, Jean T, Panic, Gordana, Daubenberger, Claudia, Gueuning, Morgan, Frey, Jürg E, Keiser, Jennifer

“…Schistosomiasis is a neglected tropical disease burdening millions of people. One drug, praziquantel, is currently used for treatment and control. Clinically…”
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Microbiota analysis optimization for human bronchoalveolar lavage fluid by Schneeberger, Pierre H H, Prescod, Janice, Levy, Liran, Hwang, David, Martinu, Tereza, Coburn, Bryan

“…It is now possible to comprehensively characterize the microbiota of the lungs using culture-independent, sequencing-based assays. Several sample types have…”
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Lung Allograft Microbiome Association with Gastroesophageal Reflux, Inflammation, and Allograft Dysfunction by Schneeberger, Pierre H H, Zhang, Chen Yang Kevin, Santilli, Jessica, Chen, Bo, Xu, Wei, Lee, Youngho, Wijesinha, Zonelle, Reguera-Nuñez, Elaine, Yee, Noelle, Ahmed, Musawir, Boonstra, Kristen, Ramendra, Rayoun, Frankel, Courtney W, Palmer, Scott M, Todd, Jamie L, Martinu, Tereza, Coburn, Bryan

“…It remains unclear how gastroesophageal reflux disease (GERD) affects allograft microbial community composition in lung transplant recipients and its impact on…”
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Transitions in oral and gut microbiome of HPV+ oropharyngeal squamous cell carcinoma following definitive chemoradiotherapy (ROMA LA-OPSCC study) by Oliva, Marc, Schneeberger, Pierre H. H., Rey, Victor, Cho, Matthew, Taylor, Rachel, Hansen, Aaron R., Taylor, Kirsty, Hosni, Ali, Bayley, Andrew, Hope, Andrew J., Bratman, Scott V., Ringash, Jolie, Singh, Simron, Weinreb, Ilan, Perez-Ordoñez, Bayardo, Chepeha, Douglas, Waldron, John, Xu, Wei, Guttman, David, Siu, Lillian L., Coburn, Bryan, Spreafico, Anna

“…Background Oral and gut microbiomes have emerged as potential biomarkers in cancer. We characterised the oral and gut microbiomes in a prospective…”
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First-in-class Microbial Ecosystem Therapeutic 4 (MET4) in combination with immune checkpoint inhibitors in patients with advanced solid tumors (MET4-IO trial) by Spreafico, A., Heirali, A.A., Araujo, D.V., Tan, T.J., Oliva, M., Schneeberger, P.H.H., Chen, B., Wong, M.K., Stayner, L.-A., Hansen, A.R., Saibil, S.D., Wang, B.X., Cochrane, K., Sherriff, K., Allen-Vercoe, E., Xu, W., Siu, L.L., Coburn, B.

“…The intestinal microbiome has been associated with response to immune checkpoint inhibitors (ICIs) in humans and causally implicated in ICI responsiveness in…”
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