Search Results - "Scheibe, Marion"

Proteotranscriptomics assisted gene annotation and spatial proteomics of Bombyx mori BmN4 cell line by Levin, Michal, Scheibe, Marion, Butter, Falk

“…The process of identifying all coding regions in a genome is crucial for any study at the level of molecular biology, ranging from single-gene cloning to…”
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Quantitative Proteomics to Identify Nuclear RNA-Binding Proteins of Malat1 by Scherer, Marian, Levin, Michal, Butter, Falk, Scheibe, Marion

“…The long non-coding RNA Malat1 has been implicated in several human cancers, while the mechanism of action is not completely understood. As RNAs in cells…”
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Correction to: Proteotranscriptomics assisted gene annotation and spatial proteomics of Bombyx mori BmN4 cell line by Levin, Michal, Scheibe, Marion, Butter, Falk

“…An amendment to this paper has been published and can be accessed via the original article…”
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Quantitative interaction screen of telomeric repeat-containing RNA reveals novel TERRA regulators by Scheibe, Marion, Arnoult, Nausica, Kappei, Dennis, Buchholz, Frank, Decottignies, Anabelle, Butter, Falk, Mann, Matthias

“…Telomeres are actively transcribed into telomeric repeat-containing RNA (TERRA), which has been implicated in the regulation of telomere length and…”
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Unbiased screening identifies regulators of cell-cell adhesion and treatment options in pemphigus by Franz, Henriette, Rathod, Maitreyi, Zimmermann, Aude, Stüdle, Chiara, Beyersdorfer, Vivien, Leal-Fischer, Karen, Hanns, Pauline, Cunha, Tomás, Didona, Dario, Hertl, Michael, Scheibe, Marion, Butter, Falk, Schmidt, Enno, Spindler, Volker

“…Cell-cell junctions, and specifically desmosomes, are crucial for robust intercellular adhesion. Desmosomal function is compromised in the autoimmune…”
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The RNA fold interactome of evolutionary conserved RNA structures in S. cerevisiae by Casas-Vila, Nuria, Sayols, Sergi, Pérez-Martínez, Lara, Scheibe, Marion, Butter, Falk

“…RNA-binding proteins play key roles in regulation of gene expression via recognition of structural features in RNA molecules. Here we apply a quantitative RNA…”
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PAR-TERRA is the main contributor to telomeric repeat-containing RNA transcripts in normal and cancer mouse cells by Viceconte, Nikenza, Loriot, Axelle, Lona Abreu, Patricia, Scheibe, Marion, Fradera Sola, Albert, Butter, Falk, De Smet, Charles, Azzalin, Claus Maria, Arnoult, Nausica, Decottignies, Anabelle

“…© 2021 Viceconte et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society. This article is distributed exclusively by the RNA Society for…”
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Unbiased RNA-protein interaction screen by quantitative proteomics by Butter, Falk, Scheibe, Marion, Mörl, Mario, Mann, Matthias

“…Mass spectrometry (MS)-based quantitative interaction proteomics has successfully elucidated specific protein-protein, DNA-protein, and small molecule-protein…”
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Proteome-wide analysis of disease-associated SNPs that show allele-specific transcription factor binding by Butter, Falk, Davison, Lucy, Viturawong, Tar, Scheibe, Marion, Vermeulen, Michiel, Todd, John A, Mann, Matthias

“…A causative role for single nucleotide polymorphisms (SNPs) in many genetic disorders has become evident through numerous genome-wide association studies…”
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Quantitative mass spectrometry and PAR-CLIP to identify RNA-protein interactions by Scheibe, Marion, Butter, Falk, Hafner, Markus, Tuschl, Thomas, Mann, Matthias

“…Systematic analysis of the RNA-protein interactome requires robust and scalable methods. We here show the combination of two completely orthogonal, generic…”
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Reader interactome of epigenetic histone marks in birds by Bluhm, Alina, Casas-Vila, Nuria, Scheibe, Marion, Butter, Falk

“…Lysine methylation is part of the posttranscriptional histone code employed to recruit modification specific readers to chromatin. Unbiased, quantitative mass…”
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Identification of Pri-miRNA Stem-Loop Interacting Proteins in Plants Using a Modified Version of the Csy4 CRISPR Endonuclease by Lüders, Janina, Winkel, Andreas R., Reichel, Marlene, Bitterer, Valentin W., Scheibe, Marion, Widmann, Christiane, Butter, Falk, Köster, Tino

“…Regulation at the RNA level by RNA-binding proteins (RBPs) and microRNAs (miRNAs) is key to coordinating eukaryotic gene expression. In plants, the importance…”
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The nucleolar DExD/H protein Hel66 is involved in ribosome biogenesis in Trypanosoma brucei by Bakari-Soale, Majeed, Ikenga, Nonso Josephat, Scheibe, Marion, Butter, Falk, Jones, Nicola G., Kramer, Susanne, Engstler, Markus

“…The biosynthesis of ribosomes is a complex cellular process involving ribosomal RNA, ribosomal proteins and several further trans-acting factors. DExD/H box…”
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Phylointeractomics reconstructs functional evolution of protein binding by Kappei, Dennis, Scheibe, Marion, Paszkowski-Rogacz, Maciej, Bluhm, Alina, Gossmann, Toni Ingolf, Dietz, Sabrina, Dejung, Mario, Herlyn, Holger, Buchholz, Frank, Mann, Matthias, Butter, Falk

“…Molecular phylogenomics investigates evolutionary relationships based on genomic data. However, despite genomic sequence conservation, changes in protein…”
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Quantitative proteomic analysis reveals concurrent RNA-protein interactions and identifies new RNA-binding proteins in Saccharomyces cerevisiae by Klass, Daniel M, Scheibe, Marion, Butter, Falk, Hogan, Gregory J, Mann, Matthias, Brown, Patrick O

“…A growing body of evidence supports the existence of an extensive network of RNA-binding proteins (RBPs) whose combinatorial binding affects the…”
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HOT1 is a mammalian direct telomere repeat-binding protein contributing to telomerase recruitment by Kappei, Dennis, Butter, Falk, Benda, Christian, Scheibe, Marion, Draškovič, Irena, Stevense, Michelle, Novo, Clara Lopes, Basquin, Claire, Araki, Masatake, Araki, Kimi, Krastev, Dragomir Blazhev, Kittler, Ralf, Jessberger, Rolf, Londoño-Vallejo, J Arturo, Mann, Matthias, Buchholz, Frank

“…Telomeres are repetitive DNA structures that, together with the shelterin and the CST complex, protect the ends of chromosomes. Telomere shortening is…”
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DNA damage repair proteins across the Tree of Life by Nischwitz, Emily, Schoonenberg, Vivien A.C., Fradera-Sola, Albert, Dejung, Mario, Vydzhak, Olga, Levin, Michal, Luke, Brian, Butter, Falk, Scheibe, Marion

“…Genome maintenance is orchestrated by a highly regulated DNA damage response with specific DNA repair pathways. Here, we investigate the phylogenetic diversity…”
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A DNA methylation reader complex that enhances gene transcription by Harris, C Jake, Scheibe, Marion, Wongpalee, Somsakul Pop, Liu, Wanlu, Cornett, Evan M, Vaughan, Robert M, Li, Xueqin, Chen, Wei, Xue, Yan, Zhong, Zhenhui, Yen, Linda, Barshop, William D, Rayatpisheh, Shima, Gallego-Bartolome, Javier, Groth, Martin, Wang, Zonghua, Wohlschlegel, James A, Du, Jiamu, Rothbart, Scott B, Butter, Falk, Jacobsen, Steven E

“…DNA methylation generally functions as a repressive transcriptional signal, but it is also known to activate gene expression. In either case, the downstream…”
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Ythdf is a N6‐methyladenosine reader that modulates Fmr1 target mRNA selection and restricts axonal growth in Drosophila by Worpenberg, Lina, Paolantoni, Chiara, Longhi, Sara, Mulorz, Miriam M, Lence, Tina, Wessels, Hans‐Hermann, Dassi, Erik, Aiello, Giuseppe, Sutandy, F X Reymond, Scheibe, Marion, Edupuganti, Raghu R, Busch, Anke, Möckel, Martin M, Vermeulen, Michiel, Butter, Falk, König, Julian, Notarangelo, Michela, Ohler, Uwe, Dieterich, Christoph, Quattrone, Alessandro, Soldano, Alessia, Roignant, Jean‐Yves

“…N6‐methyladenosine (m 6 A) regulates a variety of physiological processes through modulation of RNA metabolism. This modification is particularly enriched in…”
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Genome-wide Rules of Nucleosome Phasing in Drosophila by Baldi, Sandro, Jain, Dhawal S., Harpprecht, Lisa, Zabel, Angelika, Scheibe, Marion, Butter, Falk, Straub, Tobias, Becker, Peter B.

“…Regular successions of positioned nucleosomes, or phased nucleosome arrays (PNAs), are predominantly known from transcriptional start sites (TSSs). It is…”
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