Search Results - "Saw, Jimmy H"

Asgard archaea illuminate the origin of eukaryotic cellular complexity by Zaremba-Niedzwiedzka, Katarzyna, Caceres, Eva F., Saw, Jimmy H., Bäckström, Disa, Juzokaite, Lina, Vancaester, Emmelien, Seitz, Kiley W., Anantharaman, Karthik, Starnawski, Piotr, Kjeldsen, Kasper U., Stott, Matthew B., Nunoura, Takuro, Banfield, Jillian F., Schramm, Andreas, Baker, Brett J., Spang, Anja, Ettema, Thijs J. G.

“…The origin and cellular complexity of eukaryotes represent a major enigma in biology. Current data support scenarios in which an archaeal host cell and an…”
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Asgard archaea are the closest prokaryotic relatives of eukaryotes by Spang, Anja, Eme, Laura, Saw, Jimmy H, Caceres, Eva F, Zaremba-Niedzwiedzka, Katarzyna, Lombard, Jonathan, Guy, Lionel, Ettema, Thijs J G

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Assembling the marine metagenome, one cell at a time by Woyke, Tanja, Xie, Gary, Copeland, Alex, González, José M, Han, Cliff, Kiss, Hajnalka, Saw, Jimmy H, Senin, Pavel, Yang, Chi, Chatterji, Sourav, Cheng, Jan-Fang, Eisen, Jonathan A, Sieracki, Michael E, Stepanauskas, Ramunas

“…The difficulty associated with the cultivation of most microorganisms and the complexity of natural microbial assemblages, such as marine plankton or human…”
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Spotting disease disrupts the microbiome of infected purple sea urchins, Strongylocentrotus purpuratus by Shaw, Chloe G, Pavloudi, Christina, Crow, Ryley S, Saw, Jimmy H, Smith, L Courtney

“…Spotting disease infects a variety of sea urchin species across many different marine locations. The disease is characterized by discrete lesions on the body…”
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Characterizing the Uncultivated Microbial Minority: towards Understanding the Roles of the Rare Biosphere in Microbial Communities by Saw, Jimmy H W

“…Microbial communities are frequently numerically dominated by just a few species. Often, the long "tail" of the rank-abundance plots of microbial communities…”
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Cultivation and complete genome sequencing of Gloeobacter kilaueensis sp. nov., from a lava cave in Kīlauea Caldera, Hawai'i by Saw, Jimmy H W, Schatz, Michael, Brown, Mark V, Kunkel, Dennis D, Foster, Jamie S, Shick, Harry, Christensen, Stephanie, Hou, Shaobin, Wan, Xuehua, Donachie, Stuart P

“…The ancestor of Gloeobacter violaceus PCC 7421(T) is believed to have diverged from that of all known cyanobacteria before the evolution of thylakoid membranes…”
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Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia by Senin, Pavel, Wang, Jianmei, Hou, Shaobin, Alam, Maqsudul, Saw, Jimmy H, Zhou, Zhemin, Stott, Matthew B, Bodelier, Paul L. E, Ren, Yan, Feng, Lu, Smirnova, Angela V, Ly, Binh, Weatherby, Tina M, Mountain, Bruce W, Wang, Lei, Yuryev, Anton, Crowe, Michelle A, Dunfield, Peter F, Liesack, Werner

“…Aerobic methanotrophic bacteria consume methane as it diffuses away from methanogenic zones of soil and sediment. They act as a biofilter to reduce methane…”
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Islands Within Islands: Bacterial Phylogenetic Structure and Consortia in Hawaiian Lava Caves and Fumaroles by Prescott, Rebecca D., Zamkovaya, Tatyana, Donachie, Stuart P., Northup, Diana E., Medley, Joseph J., Monsalve, Natalia, Saw, Jimmy H., Decho, Alan W., Chain, Patrick S. G., Boston, Penelope J.

“…Lava caves, tubes, and fumaroles in Hawai‘i present a range of volcanic, oligotrophic environments from different lava flows and host unexpectedly high levels…”
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Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea by Baker, Brett J., Saw, Jimmy H., Lind, Anders E., Lazar, Cassandre Sara, Hinrichs, Kai-Uwe, Teske, Andreas P., Ettema, Thijs J. G.

“…The subsurface biosphere is largely unexplored and contains a broad diversity of uncultured microbes 1 . Despite being one of the few prokaryotic lineages that…”
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Metabolic versatility of Caldarchaeales from geothermal features of Hawai’i and Chile as revealed by five metagenome-assembled genomes by Balbay, Manolya Gul, Shlafstein, Maximillian D., Cockell, Charles, Cady, Sherry L., Prescott, Rebecca D., Lim, Darlene S. S., Chain, Patrick S. G., Donachie, Stuart P., Decho, Alan W., Saw, Jimmy H.

“…Members of the archaeal order Caldarchaeales (previously the phylum Aigarchaeota) are poorly sampled and are represented in public databases by relatively few…”
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Pangenomics Analysis Reveals Diversification of Enzyme Families and Niche Specialization in Globally Abundant SAR202 Bacteria by Saw, Jimmy H W, Nunoura, Takuro, Hirai, Miho, Takaki, Yoshihiro, Parsons, Rachel, Michelsen, Michelle, Longnecker, Krista, Kujawinski, Elizabeth B, Stepanauskas, Ramunas, Landry, Zachary, Carlson, Craig A, Giovannoni, Stephen J

“…It has been hypothesized that the abundant heterotrophic ocean bacterioplankton in the SAR202 clade of the phylum evolved specialized metabolisms for the…”
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Exploring microbial dark matter to resolve the deep archaeal ancestry of eukaryotes by Saw, Jimmy H., Spang, Anja, Zaremba-Niedzwiedzka, Katarzyna, Juzokaite, Lina, Dodsworth, Jeremy A., Murugapiran, Senthil K., Colman, Dan R., Takacs-Vesbach, Cristina, Hedlund, Brian P., Guy, Lionel, Ettema, Thijs J. G.

“…The origin of eukaryotes represents an enigmatic puzzle, which is still lacking a number of essential pieces. Whereas it is currently accepted that the process…”
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‘Geoarchaeote NAG1’ is a deeply rooting lineage of the archaeal order Thermoproteales rather than a new phylum by Guy, Lionel, Spang, Anja, Saw, Jimmy H, Ettema, Thijs J G

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Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia by Hou, Shaobin, Makarova, Kira S, Saw, Jimmy H W, Senin, Pavel, Ly, Benjamin V, Zhou, Zhemin, Ren, Yan, Wang, Jianmei, Galperin, Michael Y, Omelchenko, Marina V, Wolf, Yuri I, Yutin, Natalya, Koonin, Eugene V, Stott, Matthew B, Mountain, Bruce W, Crowe, Michelle A, Smirnova, Angela V, Dunfield, Peter F, Feng, Lu, Wang, Lei, Alam, Maqsudul

“…The phylum Verrucomicrobia is a widespread but poorly characterized bacterial clade. Although cultivation-independent approaches detect representatives of this…”
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Complex archaea that bridge the gap between prokaryotes and eukaryotes by Spang, Anja, Saw, Jimmy H., Jørgensen, Steffen L., Zaremba-Niedzwiedzka, Katarzyna, Martijn, Joran, Lind, Anders E., van Eijk, Roel, Schleper, Christa, Guy, Lionel, Ettema, Thijs J. G.

“…The origin of the eukaryotic cell remains one of the most contentious puzzles in modern biology. Recent studies have provided support for the emergence of the…”
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Low X/Y divergence in four pairs of papaya sex-linked genes by Yu, Qingyi, Hou, Shaobin, Feltus, F. Alex, Jones, Meghan R, Murray, Jan E, Veatch, Olivia, Lemke, Cornelia, Saw, Jimmy H, Moore, Richard C, Thimmapuram, Jyothi, Liu, Lei, Moore, Paul H, Alam, Maqsudul, Jiang, Jiming, Paterson, Andrew H, Ming, Ray

“…Sex chromosomes in flowering plants, in contrast to those in animals, evolved relatively recently and only a few are heteromorphic. The homomorphic sex…”
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Complete Genome Sequencing of a Novel Gloeobacter Species from a Waterfall Cave in Mexico by Saw, Jimmy H, Cardona, Tanai, Montejano, Gustavo

“…Abstract Only two complete genomes of the cyanobacterial genus Gloeobacter from two very different regions of the world currently exist. Here, we present the…”
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Genome Sequence of the Deep-Sea γ-Proteobacterium Idiomarina loihiensis Reveals Amino Acid Fermentation as a Source of Carbon and Energy by Hou, Shaobin, Saw, Jimmy H, Lee, Kit Shan, Freitas, Tracey A, Belisle, Claude, Kawarabayasi, Yutaka, Donachie, Stuart P, Pikina, Alla, Galperin, Michael Y, Koonin, Eugene V, Makarova, Kira S, Omelchenko, Marina V, Sorokin, Alexander, Wolf, Yuri I, Li, Qing X, Keum, Young Soo, Campbell, Sonia, Denery, Judith, Aizawa, Shin-Ichi, Shibata, Satoshi, Malahoff, Alexander, Alam, Maqsudul

“…We report the complete genome sequence of the deep-sea γ-proteobacterium, Idiomarina loihiensis, isolated recently from a hydrothermal vent at 1,300-m depth on…”
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Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes by Eme, Laura, Tamarit, Daniel, Caceres, Eva F., Stairs, Courtney W., De Anda, Valerie, Schön, Max E., Seitz, Kiley W., Dombrowski, Nina, Lewis, William H., Homa, Felix, Saw, Jimmy H., Lombard, Jonathan, Nunoura, Takuro, Li, Wen-Jun, Hua, Zheng-Shuang, Chen, Lin-Xing, Banfield, Jillian F., John, Emily St, Reysenbach, Anna-Louise, Stott, Matthew B., Schramm, Andreas, Kjeldsen, Kasper U., Teske, Andreas P., Baker, Brett J., Ettema, Thijs J. G.

“…In the ongoing debates about eukaryogenesis—the series of evolutionary events leading to the emergence of the eukaryotic cell from prokaryotic…”
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Comparison of Vibrio coralliilyticus virulence in Pacific oyster larvae and corals by Ushijima, Blake, Saw, Jimmy H, Videau, Patrick, Häse, Claudia C

“…The bacterium has been implicated in mass mortalities of corals and shellfish larvae. However, using corals for manipulative infection experiments can be…”
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