Search Results - "Santiveri, Clara M"
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Discovery of first-in-class reversible dual small molecule inhibitors against G9a and DNMTs in hematological malignancies
Published in Nature communications (26-05-2017)“…The indisputable role of epigenetics in cancer and the fact that epigenetic alterations can be reversed have favoured development of epigenetic drugs. In this…”
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Interaction Networks in Protein Folding via Atomic-Resolution Experiments and Long-Time-Scale Molecular Dynamics Simulations
Published in Journal of the American Chemical Society (27-05-2015)“…The integration of atomic-resolution experimental and computational methods offers the potential for elucidating key aspects of protein folding that are not…”
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Molecular basis of histone H3K36me3 recognition by the PWWP domain of Brpf1
Published in Nature structural & molecular biology (01-05-2010)“…Trimethylation of Lys36 in histone H3 (H3K36me3) coordinates events associated with the elongation phase of transcription and is also emerging as an important…”
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Structural basis for interdomain communication in SHIP2 providing high phosphatase activity
Published in eLife (09-08-2017)“…SH2-containing-inositol-5-phosphatases (SHIPs) dephosphorylate the 5-phosphate of phosphatidylinositol-3,4,5-trisphosphate (PI(3,4,5)P ) and play important…”
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Urine NMR-based TB metabolic fingerprinting for the diagnosis of TB in children
Published in Scientific reports (07-06-2021)“…Tuberculosis (TB) is a major cause of morbidity and mortality in children, and early diagnosis and treatment are crucial to reduce long-term morbidity and…”
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Context-Dependence of the Contribution of Disulfide Bonds to β-Hairpin Stability
Published in Chemistry : a European journal (07-01-2008)“…Incorporation of disulfide bonds to stabilize protein and peptide structures is not always a successful strategy. To advance current knowledge on the…”
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Two Singular Types of CCCH Tandem Zinc Finger in Nab2p Contribute to Polyadenosine RNA Recognition
Published in Structure (London) (08-10-2013)“…The seven C-terminal CCCH-type zinc fingers of Nab2p bind the poly(A) tail of mRNA (∼A25). Using NMR, we demonstrated that the first four (Zf1–Zf4) contain two…”
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Pub1p C-terminal RRM domain interacts with Tif4631p through a conserved region neighbouring the Pab1p binding site
Published in PloS one (08-09-2011)“…Pub1p, a highly abundant poly(A)+ mRNA binding protein in Saccharomyces cerevisiae, influences the stability and translational control of many cellular…”
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Structure of the RAF1-HSP90-CDC37 complex reveals the basis of RAF1 regulation
Published in Molecular cell (15-09-2022)“…RAF kinases are RAS-activated enzymes that initiate signaling through the MAPK cascade to control cellular proliferation, differentiation, and survival. Here,…”
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Tryptophan residues: Scarce in proteins but strong stabilizers of β-hairpin peptides
Published in Biopolymers (2010)“…Tryptophan plays important roles in protein stability and recognition despite its scarcity in proteins. Except as fluorescent groups, they have been used…”
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The structure of transcription termination factor Nrd1 reveals an original mode for GUAA recognition
Published in Nucleic acids research (29-09-2017)“…Transcription termination of non-coding RNAs is regulated in yeast by a complex of three RNA binding proteins: Nrd1, Nab3 and Sen1. Nrd1 is central in this…”
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Alternative Activation Mechanisms of Protein Kinase B Trigger Distinct Downstream Signaling Responses
Published in The Journal of biological chemistry (09-10-2015)“…Protein kinase B (PKB/Akt) is an important mediator of signals that control various cellular processes including cell survival, growth, proliferation, and…”
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Structural basis of Nrd1-Nab3 heterodimerization
Published in Life science alliance (01-04-2022)“…Heterodimerization of RNA binding proteins Nrd1 and Nab3 is essential to communicate the RNA recognition in the nascent transcript with the Nrd1 recognition of…”
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Nuclear Magnetic Resonance study of protein-protein interactions involving apoptosis regulator Diva (Boo) and the BH3 domain of proapoptotic Bcl-2 members
Published in Journal of molecular recognition (01-12-2012)“…According to biochemical assays, the Bcl‐2 protein Diva from mouse regulates programmed cell death by heterodimerizing with other members of the family and by…”
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Disulfide bonds versus TrpTrp pairs in irregular beta-hairpins: NMR structure of vammin loop 3-derived peptides as a case study
Published in Chembiochem : a European journal of chemical biology (23-03-2009)“…Structural studies on model peptides have led to a good understanding of the rules behind the formation and stability of regular beta-hairpins. To test their…”
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Sequence Inversion and Phenylalanine Surrogates at the β-Turn Enhance the Antibiotic Activity of Gramicidin S
Published in Journal of medicinal chemistry (27-05-2010)“…A series of gramicidin S (GS) analogues have been synthesized where the Phe (i + 1) and Pro (i + 2) residues of the β-turn have been swapped while the…”
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A bacterial antirepressor with SH3 domain topology mimics operator DNA in sequestering the repressor DNA recognition helix
Published in Nucleic acids research (01-08-2010)“…Direct targeting of critical DNA-binding elements of a repressor by its cognate antirepressor is an effective means to sequester the repressor and remove a…”
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Therapeutic Index of Gramicidin S is Strongly Modulated by d-Phenylalanine Analogues at the β-Turn
Published in Journal of medicinal chemistry (12-02-2009)“…Analogues of the cationic antimicrobial peptide gramicidin S (GS), cyclo(Val-Orn-Leu-d-Phe-Pro)2, with d-Phe residues replaced by different (restricted…”
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De novo design of monomeric beta-hairpin and beta-sheet peptides
Published in Methods in molecular biology (Clifton, N.J.) (2006)“…Since the first report in 1993 (JACS 115, 5887-5888) of a peptide able to form a monomeric beta-hairpin structure in aqueous solution, the design of peptides…”
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Factors involved in the stability of isolated β‐sheets: Turn sequence, β‐sheet twisting, and hydrophobic surface burial
Published in Protein science (01-04-2004)“…We have recently reported on the design of a 20‐residue peptide able to form a significant population of a three‐stranded up‐and‐down antiparallel β‐sheet in…”
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