Search Results - "Sanfilippo, Piero"

Transcriptional Programs of Circuit Assembly in the Drosophila Visual System by Kurmangaliyev, Yerbol Z., Yoo, Juyoun, Valdes-Aleman, Javier, Sanfilippo, Piero, Zipursky, S. Lawrence

“…Precise patterns of synaptic connections between neurons are encoded in their genetic programs. Here, we use single-cell RNA sequencing to profile neuronal…”
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Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species by Sanfilippo, Piero, Wen, Jiayu, Lai, Eric C

“…Drosophila melanogaster has one of best-described transcriptomes of any multicellular organism. Nevertheless, the paucity of 3'-sequencing data in this species…”
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Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation by Westholm, Jakub O, Miura, Pedro, Olson, Sara, Shenker, Sol, Joseph, Brian, Sanfilippo, Piero, Celniker, Susan E, Graveley, Brenton R, Lai, Eric C

“…Circularization was recently recognized to broadly expand transcriptome complexity. Here, we exploit massive Drosophila total RNA-sequencing data, >5 billion…”
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Alternative polyadenylation in the nervous system: To what lengths will 3′ UTR extensions take us? by Miura, Pedro, Sanfilippo, Piero, Shenker, Sol, Lai, Eric C.

“…Alternative cleavage and polyadenylation (APA) can diversify coding and non‐coding regions, but has particular impact on increasing 3′ UTR diversity. Through…”
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Synaptic gradients transform object location to action by Dombrovski, Mark, Peek, Martin Y., Park, Jin-Yong, Vaccari, Andrea, Sumathipala, Marissa, Morrow, Carmen, Breads, Patrick, Zhao, Arthur, Kurmangaliyev, Yerbol Z., Sanfilippo, Piero, Rehan, Aadil, Polsky, Jason, Alghailani, Shada, Tenshaw, Emily, Namiki, Shigehiro, Zipursky, S. Lawrence, Card, Gwyneth M.

“…To survive, animals must convert sensory information into appropriate behaviours 1 , 2 . Vision is a common sense for locating ethologically relevant stimuli…”
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Correction: Neural specificity of the RNA-binding protein Elav is achieved by post-transcriptional repression in non-neural tissues by Sanfilippo, Piero, Smibert, Peter, Duan, Hong, Lai, Eric C

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Oxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12 by Hayes, Everett T, Wilks, Jessica C, Sanfilippo, Piero, Yohannes, Elizabeth, Tate, Daniel P, Jones, Brian D, Radmacher, Michael D, BonDurant, Sandra S, Slonczewski, Joan L

“…In Escherichia coli, pH regulates genes for amino-acid and sugar catabolism, electron transport, oxidative stress, periplasmic and envelope proteins. Many…”
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Genome-wide profiling of the 3' ends of polyadenylated RNAs by Sanfilippo, Piero, Miura, Pedro, Lai, Eric C.

“…•3′-seq is a method to map the 3′ ends of transcripts genome-wide at single nucleotide resolution.•3′-seq provides quantitative measure of 3′ UTR isoforms…”
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Overlapping Activities of ELAV/Hu Family RNA Binding Proteins Specify the Extended Neuronal 3′ UTR Landscape in Drosophila by Wei, Lu, Lee, Seungjae, Majumdar, Sonali, Zhang, Binglong, Sanfilippo, Piero, Joseph, Brian, Miura, Pedro, Soller, Matthias, Lai, Eric C.

“…The tissue-specific deployment of highly extended neural 3’ UTR isoforms, generated by alternative polyadenylation (APA), is a broad and conserved feature of…”
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IsoSCM: improved and alternative 3' UTR annotation using multiple change-point inference by Shenker, Sol, Miura, Pedro, Sanfilippo, Piero, Lai, Eric C

“…Major applications of RNA-seq data include studies of how the transcriptome is modulated at the levels of gene expression and RNA processing, and how these…”
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Neural specificity of the RNA-binding protein Elav is achieved by post-transcriptional repression in non-neural tissues by Sanfilippo, Piero, Smibert, Peter, Duan, Hong, Lai, Eric C

“…Drosophila Elav is the founding member of the conserved family of Hu RNA-binding proteins (RBPs), which play crucial and diverse roles in post-transcriptional…”
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Constitutive and Conditional Epitope Tagging of Endogenous G-Protein-Coupled Receptors in Drosophila by Bonanno, Shivan L, Sanfilippo, Piero, Eamani, Aditya, Sampson, Maureen M, Kandagedon, Binu, Li, Kenneth, Burns, Giselle D, Makar, Marylyn E, Zipursky, S Lawrence, Krantz, David E

“…To visualize the cellular and subcellular localization of neuromodulatory G-protein-coupled receptors in , we implement a molecular strategy recently used to…”
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Mapping of multiple neurotransmitter receptor subtypes and distinct protein complexes to the connectome by Sanfilippo, Piero, Kim, Alexander J, Bhukel, Anuradha, Yoo, Juyoun, Mirshahidi, Pegah S, Pandey, Vijaya, Bevir, Harry, Yuen, Ashley, Mirshahidi, Parmis S, Guo, Peiyi, Li, Hong-Sheng, Wohlschlegel, James A, Aso, Yoshinori, Zipursky, S Lawrence

“…Neurons express various combinations of neurotransmitter receptor (NR) subunits and receive inputs from multiple neuron types expressing different…”
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Publisher Correction: Synaptic gradients transform object location to action by Dombrovski, Mark, Peek, Martin Y., Park, Jin-Yong, Vaccari, Andrea, Sumathipala, Marissa, Morrow, Carmen, Breads, Patrick, Zhao, Arthur, Kurmangaliyev, Yerbol Z., Sanfilippo, Piero, Rehan, Aadil, Polsky, Jason, Alghailani, Shada, Tenshaw, Emily, Namiki, Shigehiro, Zipursky, S. Lawrence, Card, Gwyneth M.

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Characterization of a TUTase/RNase complex required for Drosophila gametogenesis by Lin, Ching-Jung, Wen, Jiayu, Bejarano, Fernando, Hu, Fuqu, Bortolamiol-Becet, Diane, Kan, Lijuan, Sanfilippo, Piero, Kondo, Shu, Lai, Eric C

“…Post-transcriptional regulatory strategies that involve coupling between terminal uridyltransferase (TUTase) and exoribonuclease enzymes have recently been…”
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Homeotic Function of Drosophila Bithorax-Complex miRNAs Mediates Fertility by Restricting Multiple Hox Genes and TALE Cofactors in the CNS by Garaulet, Daniel L., Castellanos, Monica C., Bejarano, Fernando, Sanfilippo, Piero, Tyler, David M., Allan, Douglas W., Sánchez-Herrero, Ernesto, Lai, Eric C.

“…The Drosophila Bithorax complex (BX-C) Hox cluster contains a bidirectionally transcribed miRNA locus, and a deletion mutant (Δmir) lays no eggs and is…”
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Homeotic function of Drosophila Bithorax-Complex miRNAs mediates fertility by restricting multiple Hox genes and TALE cofactors in the central nervous system by Garaulet, Daniel L., Castellanos, Monica, Bejarano, Fernando, Sanfilippo, Piero, Tyler, David M., Allan, Douglas W., Sánchez-Herrero, Ernesto, Lai, Eric C.

“…The Drosophila Bithorax-Complex (BX-C) Hox cluster contains a bidirectionally-transcribed miRNA locus, and a deletion mutant (∆ mir ) lays no eggs and is…”
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Genomewide analysis of Drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation by Westholm, Jakub O., Miura, Pedro, Olson, Sara, Shenker, Sol, Joseph, Brian, Sanfilippo, Piero, Celniker, Susan E., Graveley, Brenton R., Lai, Eric C.

“…Circularization was recently recognized to broadly expand transcriptome complexity. Here, we exploit massive Drosophila total RNA-sequencing data, >5 billion…”
Get full text