Search Results - "Sakurai, Tetsuya"

m5U-SVM: identification of RNA 5-methyluridine modification sites based on multi-view features of physicochemical features and distributed representation by Ao, Chunyan, Ye, Xiucai, Sakurai, Tetsuya, Zou, Quan, Yu, Liang

“…RNA 5-methyluridine (m5U) modifications are obtained by methylation at the C position of uridine catalyzed by pyrimidine methylation transferase, which is…”
Get full text

ATSE: a peptide toxicity predictor by exploiting structural and evolutionary information based on graph neural network and attention mechanism by Wei, Lesong, Ye, Xiucai, Xue, Yuyang, Sakurai, Tetsuya, Wei, Leyi

“…Peptides have recently emerged as promising therapeutic agents against various diseases. For both research and safety regulation purposes, it is of high…”
Get full text

A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci by Mamidi, Sujan, Healey, Adam, Huang, Pu, Grimwood, Jane, Jenkins, Jerry, Barry, Kerrie, Sreedasyam, Avinash, Shu, Shengqiang, Lovell, John T., Feldman, Maximilian, Wu, Jinxia, Yu, Yunqing, Chen, Cindy, Johnson, Jenifer, Sakakibara, Hitoshi, Kiba, Takatoshi, Sakurai, Tetsuya, Tavares, Rachel, Nusinow, Dmitri A., Baxter, Ivan, Schmutz, Jeremy, Brutnell, Thomas P., Kellogg, Elizabeth A.

“…Wild and weedy relatives of domesticated crops harbor genetic variants that can advance agricultural biotechnology. Here we provide a genome resource for the…”
Get full text

Draft genome assembly and annotation of Glycyrrhiza uralensis, a medicinal legume by Mochida, Keiichi, Sakurai, Tetsuya, Seki, Hikaru, Yoshida, Takuhiro, Takahagi, Kotaro, Sawai, Satoru, Uchiyama, Hiroshi, Muranaka, Toshiya, Saito, Kazuki

“…Summary Chinese liquorice/licorice (Glycyrrhiza uralensis) is a leguminous plant species whose roots and rhizomes have been widely used as a herbal medicine…”
Get full text

Interactive gene identification for cancer subtyping based on multi-omics clustering by Ye, Xiucai, Shi, Tianyi, Cui, Yaxuan, Sakurai, Tetsuya

“…•In this study, we propose a learning framework to identify the interactive genes based on multi-omics data, which is important to explore multiple related…”
Get full text

Complex moment-based eigensolver coupled with two Krylov subspaces by Imakura, Akira, Sakurai, Tetsuya

“…Complex moment-based eigensolvers have been well studied for solving interior eigenvalue problems because of their high parallel efficiency. Recently, as a…”
Get full text

Interpretable collaborative data analysis on distributed data by Imakura, Akira, Inaba, Hiroaki, Okada, Yukihiko, Sakurai, Tetsuya

“…•An interpretable distributed data analysis with sharing intermediate representations.•A practical supplement to the federated learning systems.•The obtained…”
Get full text

Integrated convolution and self-attention for improving peptide toxicity prediction by Jiao, Shihu, Ye, Xiucai, Sakurai, Tetsuya, Zou, Quan, Liu, Ruijun

“…Abstract Motivation Peptides are promising agents for the treatment of a variety of diseases due to their specificity and efficacy. However, the development of…”
Get full text

Another use of SMOTE for interpretable data collaboration analysis by Imakura, Akira, Kihira, Masateru, Okada, Yukihiko, Sakurai, Tetsuya

“…Recently, data collaboration (DC) analysis has been developed for privacy-preserving integrated analysis across multiple institutions. DC analysis centralizes…”
Get full text

Multiview network embedding for drug-target Interactions prediction by consistent and complementary information preserving by Shang, Yifan, Ye, Xiucai, Futamura, Yasunori, Yu, Liang, Sakurai, Tetsuya

“…Abstract Accurate prediction of drug-target interactions (DTIs) can reduce the cost and time of drug repositioning and drug discovery. Many current methods…”
Get full text

Block SS–CAA: A complex moment-based parallel nonlinear eigensolver using the block communication-avoiding Arnoldi procedure by Imakura, Akira, Sakurai, Tetsuya

“…•This paper proposes a novel complex moment-based parallel nonlinear eigensolver.•The proposed method shows a good scalability based on its hierarchical…”
Get full text

RIKEN tandem mass spectral database (ReSpect) for phytochemicals: A plant-specific MS/MS-based data resource and database by Sawada, Yuji, Nakabayashi, Ryo, Yamada, Yutaka, Suzuki, Makoto, Sato, Muneo, Sakata, Akane, Akiyama, Kenji, Sakurai, Tetsuya, Matsuda, Fumio, Aoki, Toshio, Hirai, Masami Yokota, Saito, Kazuki

“…The ReSpect database is composed of tandem mass spectrometry (MS/MS) data, and the web applications are established for the annotation of untargeted MS/MS…”
Get full text

Adaptive learning embedding features to improve the predictive performance of SARS-CoV-2 phosphorylation sites by Jiao, Shihu, Ye, Xiucai, Ao, Chunyan, Sakurai, Tetsuya, Zou, Quan, Xu, Lei

“…Abstract Motivation The rapid and extensive transmission of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has led to an unprecedented global…”
Get full text

A filter diagonalization for generalized eigenvalue problems based on the Sakurai–Sugiura projection method by Ikegami, Tsutomu, Sakurai, Tetsuya, Nagashima, Umpei

“…The Sakurai–Sugiura projection method, which solves generalized eigenvalue problems to find certain eigenvalues in a given domain, was reformulated by using…”
Get full text

Collaborative causal inference on distributed data by Kawamata, Yuji, Motai, Ryoki, Okada, Yukihiko, Imakura, Akira, Sakurai, Tetsuya

“…In recent years, the development of technologies for causal inference with privacy preservation of distributed data has gained considerable attention. Many…”
Get full text

Toward the Application of Differential Privacy to Data Collaboration by Yamashiro, Hiromi, Omote, Kazumasa, Imakura, Akira, Sakurai, Tetsuya

“…Federated Learning, a model-sharing method, and Data Collaboration, a non-model-sharing method, are recognized as data analysis methods for distributed data…”
Get full text

In Silico Analysis of Correlations between Protein Disorder and Post-Translational Modifications in Algae by Kurotani, Atsushi, Sakurai, Tetsuya

“…Recent proteome analyses have reported that intrinsically disordered regions (IDRs) of proteins play important roles in biological processes. In higher plants…”
Get full text

Extracellular vesicles derived from Wharton’s Jelly mesenchymal stem cells inhibit the tumor environment via the miR-125b/HIF1α signaling pathway by Chang, Yun-Hsuan, Vuong, Cat-Khanh, Ngo, Nhat-Hoang, Yamashita, Toshiharu, Ye, Xiucai, Futamura, Yasunori, Fukushige, Mizuho, Obata-Yasuoka, Mana, Hamada, Hiromi, Osaka, Motoo, Hiramatsu, Yuji, Sakurai, Tetsuya, Ohneda, Osamu

“…Triple negative breast cancer (TNBC) is associated with worse outcomes and results in high mortality; therefore, great efforts are required to find effective…”
Get full text

DC-COX: Data collaboration Cox proportional hazards model for privacy-preserving survival analysis on multiple parties by Imakura, Akira, Tsunoda, Ryoya, Kagawa, Rina, Yamagata, Kunihiro, Sakurai, Tetsuya

“…The demand for the privacy-preserving survival analysis of medical data integrated from multiple institutions or countries has been increased. However, sharing…”
Get full text

Missing Value Imputation With Low-Rank Matrix Completion in Single-Cell RNA-Seq Data by Considering Cell Heterogeneity by Huang, Meng, Ye, Xiucai, Li, Hongmin, Sakurai, Tetsuya

“…Single-cell RNA-sequencing (scRNA-seq) technologies enable the measurements of gene expressions in individual cells, which is helpful for exploring cancer…”
Get full text