Search Results - "Saeed, Alexander"

The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results by Braisted, John C, Kuntumalla, Srilatha, Vogel, Christine, Marcotte, Edward M, Rodrigues, Alan R, Wang, Rong, Huang, Shih-Ting, Ferlanti, Erik S, Saeed, Alexander I, Fleischmann, Robert D, Peterson, Scott N, Pieper, Rembert

“…Mass spectrometry (MS) based label-free protein quantitation has mainly focused on analysis of ion peak heights and peptide spectral counts. Most analyses of…”
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Within the fold: assessing differential expression measures and reproducibility in microarray assays by Yang, Ivana V, Chen, Emily, Hasseman, Jeremy P, Liang, Wei, Frank, Bryan C, Wang, Shuibang, Sharov, Vasily, Saeed, Alexander I, White, Joseph, Li, Jerry, Lee, Norman H, Yeatman, Timothy J, Quackenbush, John

“…'Fold-change' cutoffs have been widely used in microarray assays to identify genes that are differentially expressed between query and reference samples. More…”
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TM4 microarray software suite by Saeed, Alexander I, Bhagabati, Nirmal K, Braisted, John C, Liang, Wei, Sharov, Vasily, Howe, Eleanor A, Li, Jianwei, Thiagarajan, Mathangi, White, Joseph A, Quackenbush, John

“…Powerful specialized software is essential for managing, quantifying, and ultimately deriving scientific insight from results of a microarray experiment. We…”
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Microarrays: an overview by Lee, Norman H, Saeed, Alexander I

“…Gene expression microarrays are being used widely to address a myriad of complex biological questions. To gather meaningful expression data, it is crucial to…”
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Identification of tumor markers in models of human colorectal cancer using a 19,200-element complementary DNA microarray by HEGDE, Priti, RONG QI, SHAROV, Vasily, LEE, Norman H, YEATMAN, Timothy J, QUACKENBUSH, John, GASPARD, Renee, ABERNATHY, Kristie, DHARAP, Sonia, EARLE-HUGHES, Julie, GAY, Cheryl, NWOKEKEH, Nnenna U, TINGAN CHEN, SAEED, Alexander I

“…Metastasis represents a crucial transition in disease development and progression and has a profound impact on survival for a wide variety of cancers. Cell…”
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CGHAnalyzer: a stand-alone software package for cancer genome analysis using array-based DNA copy number data by Margolin, Adam A., Greshock, Joel, Naylor, Tara L., Mosse, Yael, Maris, John M., Bignell, Graham, Saeed, Alexander I., Quackenbush, John, Weber, Barbara L.

“…This synopsis provides an overview of array-based comparative genomic hybridization data display, abstraction and analysis using CGHAnalyzer, a software suite,…”
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Tracing phylogenomic events leading to diversity of Haemophilus influenzae and the emergence of Brazilian Purpuric Fever (BPF)-associated clones by Papazisi, Leka, Ratnayake, Shashikala, Remortel, Brian G., Bock, Geoffrey R., Liang, Wei, Saeed, Alexander I., Liu, Jia, Fleischmann, Robert D., Kilian, Mogens, Peterson, Scott N.

“…Here we report the use of a multi-genome DNA microarray to elucidate the genomic events associated with the emergence of the clonal variants of Haemophilus…”
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Predicting Antibiotic Resistance in Gram-Negative Bacilli from Resistance Genes by Walker, G Terrance, Quan, Julia, Higgins, Stephen G, Toraskar, Nikhil, Chang, Weizhong, Saeed, Alexander, Sapiro, Vadim, Pitzer, Kelsey, Whitfield, Natalie, Lopansri, Bert K, Motyl, Mary, Sahm, Daniel

“…We developed a rapid high-throughput PCR test and evaluated highly antibiotic-resistant clinical isolates of (  = 2,919), (  = 1,974), (  = 1,150), and (  =…”
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Physiogenomic resources for rat models of heart, lung and blood disorders by Lee, Norman H, Malek, Renae L, Wang, Hong-ying, Kwitek, Anne E, Greene, Andrew S, Bhagabati, Nirmal, Borchardt, Gretta, Cahill, Lisa, Currier, Tracey, Frank, Bryan, Fu, Xianping, Hasinoff, Michael, Howe, Eleanor, Letwin, Noah, Luu, Truong V, Saeed, Alexander, Sajadi, Hedieh, Salzberg, Steven L, Sultana, Razvan, Thiagarajan, Mathangi, Tsai, Jennifer, Veratti, Kathleen, White, Joseph, Quackenbush, John, Jacob, Howard J

“…Cardiovascular disorders are influenced by genetic and environmental factors. The TIGR rodent expression web-based resource (TREX) contains over 2,200…”
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Identification of genes involved in colon cancer metastasis using cDNA microarrays by Hegde, Priti, Earle-Hughes, Julie, Abernathy, Kristie, Gay, Cheryl, Dharap, Sonia, Saeed, Alexander I., Sharov, Vasily, Lee, Norman H., Yeatman, Timothy, Quackenbush, John

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