Search Results - "SWIFT, Craig"

MOST: a modified MLST typing tool based on short read sequencing by Tewolde, Rediat, Dallman, Timothy, Schaefer, Ulf, Sheppard, Carmen L, Ashton, Philip, Pichon, Bruno, Ellington, Matthew, Swift, Craig, Green, Jonathan, Underwood, Anthony

“…Multilocus sequence typing (MLST) is an effective method to describe bacterial populations. Conventionally, MLST involves Polymerase Chain Reaction (PCR)…”
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Phase-Variable Surface Structures Are Required for Infection of Campylobacter jejuni by Bacteriophages by Coward, Chris, Grant, Andrew J, Swift, Craig, Philp, Jennifer, Towler, Rebecca, Heydarian, Mohammad, Frost, Jennifer A, Maskell, Duncan J

“…This study characterizes the interaction between Campylobacter jejuni and the 16 phages used in the United Kingdom typing scheme by screening spontaneous…”
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Tracking of Listeria monocytogenes in meat establishment using Whole Genome Sequencing as a food safety management tool: A proof of concept by Nastasijevic, Ivan, Milanov, Dubravka, Velebit, Branko, Djordjevic, Vesna, Swift, Craig, Painset, Anais, Lakicevic, Brankica

“…Repeated Listeria outbreaks particularly associated with Ready-To-Eat (RTE) delicatessen meat products have been reported annually at global level. The most…”
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Surveillance of antimicrobial resistant Shiga toxin-producing E. coli O157:H7 in England, 2016–2020 by Greig, David R, Do Nascimento, Vivienne, Olonade, Israel, Swift, Craig, Nair, Satheesh, Jenkins, Claire

“…Abstract Objectives Shiga toxin-producing Escherichia coli (STEC) O157:H7 are zoonotic pathogens and transmission to humans occurs via contaminated food or…”
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Comparison of phenotypic and WGS-derived antimicrobial resistance profiles of Campylobacter jejuni and Campylobacter coli isolated from cases of diarrhoeal disease in England and Wales, 2015–16 by Painset, Anaïs, Day, Martin, Doumith, Michel, Rigby, Jonathan, Jenkins, Claire, Grant, Kathie, Dallman, Timothy J, Godbole, Gauri, Swift, Craig

“…Abstract Objectives To compare and evaluate phenotypic and genotypic methods for the detection of antimicrobial resistance (AMR) in Campylobacter jejuni and…”
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Escherichia coli encoding Shiga toxin subtype Stx2f causing human infections in England, 2015-2022 by Den Ouden, Anouschka, Greig, David R, Rodwell, Ella V, Tripodo, Francesco, Olonade, Israel, Swift, Craig, Jenkins, Claire

“…Shiga toxin-producing (STEC) belong to a diverse group of gastrointestinal pathogens defined by the presence of Shiga toxin genes ( ) of which there are at…”
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Microevolution of Campylobacter jejuni during long-term infection in an immunocompromised host by Barker, Clare R., Painset, Anaïs, Swift, Craig, Jenkins, Claire, Godbole, Gauri, Maiden, Martin C. J., Dallman, Timothy J.

“…Campylobacteriosis typically manifests as a short-lived, self-limiting gastrointestinal infection in humans, however prolonged infection can be seen in cases…”
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Utility of Whole Genome Sequencing To Describe the Persistence and Evolution of Listeria monocytogenes Strains within Crabmeat Processing Environments Linked to Two Outbreaks of Listeriosis by Elson, Richard, Awofisayo-Okuyelu, Adedoyin, Greener, Trevor, Swift, Craig, Painset, Anaïs, Amar, Corinne Francoise Laurence, Newton, Autilia, Aird, Heather, Swindlehurst, Mark, Elviss, Nicola, Foster, Kirsty, Dallman, Timothy J, Ruggles, Ruth, Grant, Kathie

“…This article describes the identification and investigation of two extended outbreaks of listeriosis in which crabmeat was identified as the vehicle of…”
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Exploiting Bacterial Whole-Genome Sequencing Data for Evaluation of Diagnostic Assays: Campylobacter Species Identification as a Case Study by Jansen van Rensburg, Melissa J, Swift, Craig, Cody, Alison J, Jenkins, Claire, Maiden, Martin C J

“…The application of whole-genome sequencing (WGS) to problems in clinical microbiology has had a major impact on the field. Clinical laboratories are now using…”
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Genomic analysis of an outbreak of Shiga toxin-producing Escherichia coli O183:H18 in the United Kingdom, 2023 by Greig, David R, Quinn, Orlagh I, Rodwell, Ella V, Olonade, Israel, Swift, Craig, Douglas, Amy, Balasegram, Sooria, Jenkins, Claire

“…In June 2023, UKHSA surveillance systems detected an outbreak of severe gastrointestinal symptoms caused by a rare serotype of Shiga toxin-producing , STEC…”
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Phylogenomic analysis of gastroenteritis-associated Clostridium perfringens in England and Wales over a 7-year period indicates distribution of clonal toxigenic strains in multiple outbreaks and extensive involvement of enterotoxin-encoding (CPE) plasmids by Kiu, Raymond, Caim, Shabhonam, Painset, Anais, Pickard, Derek, Swift, Craig, Dougan, Gordon, Mather, Alison E, Amar, Corinne, Hall, Lindsay J

“…is a major enteric pathogen known to cause gastroenteritis in human adults. Although major outbreak cases are frequently reported, only limited whole-genome…”
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Human papillomavirus genotype detection and viral load in paired genital and urine samples from both females and males by Bissett, Sara L., Howell-Jones, Rebecca, Swift, Craig, De Silva, Natasha, Biscornet, Leon, Parry, John V., Saunders, Nicholas A., Nathan, Mayura, Soldan, Kate, Szarewski, Anne, Cuzick, Jack, Beddows, Simon

“…The ability to detect type‐specific high risk HPV (HR‐HPV) infections in samples from females and males is important for monitoring the epidemiology of HPV and…”
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Utility of real-time amplification of selected 16S rRNA gene sequences as a tool for detection and identification of microbial signatures directly from clinical samples by Edwards, Kirstin J, Logan, Julie M J, Langham, Sally, Swift, Craig, Gharbia, Saheer E

“…The potential of incorporating a real-time PCR for amplification and detection of 16S rRNA gene signatures directly from clinical samples was assessed as a…”
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Phylogenomic analysis of gastroenteritis-associated Clostridium perfringens identifies isogenic strains in multiple outbreaks and novel virulence-related features by Kiu, Raymond, Caim, Shabhonam, Pickard, Derek, Dougan, Gordon, Painset, Anais, Swift, Craig, Mather, Alison, Amar, Corinne, Hall, Lindsay

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Utility of real-time amplification of selected 1 6S rRNA gene sequences as a tool for detection and identification of microbial signatures directly from clinical samples by EDWARDS, Kirstin J, LOGAN, Julie M. J, LANGHAM, Sally, SWIFT, Craig, GHARBIA, Saheer E

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Applicability of a rapid duplex real-time PCR assay for speciation of Campylobacter jejuni and Campylobacter coli directly from culture plates by Best, Emma L, Powell, Ella J, Swift, Craig, Grant, Kathleen A, Frost, Jennifer A

“…A rapid duplex real-time polymerase chain reaction (PCR) assay for speciation of Campylobacter jejuni and Campylobacter coli using the ABI Prism 7700 sequence…”
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Erratum: Human papillomavirus genotype detection and viral load in paired genital and urine samples from both females and males by Bissett, Sara L., Howell-Jones, Rebecca, Swift, Craig, De Silva, Natasha, Biscornet, Leon, Parry, John V., Saunders, Nicholas A., Nathan, Mayura, Soldan, Kate, Szarewski, Anne, Cuzick, Jack, Beddows, Simon

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GAIA: a benchmark for General AI Assistants by Mialon, Grégoire, Fourrier, Clémentine, Swift, Craig, Wolf, Thomas, LeCun, Yann, Scialom, Thomas

“…We introduce GAIA, a benchmark for General AI Assistants that, if solved, would represent a milestone in AI research. GAIA proposes real-world questions that…”
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Amoxicillin therapy of poultry flocks: effect upon the selection of amoxicillin-resistant commensal Campylobacter spp by Elviss, Nicola C., Williams, Lisa K., Jørgensen, Frieda, Chisholm, Stephanie A., Lawson, Andrew J., Swift, Craig, Owen, Robert J., Griggs, Deborah J., Johnson, Maggie M., Humphrey, Tom J., Piddock, Laura J. V.

“…Background The aim of this study was to investigate the effect of amoxicillin therapy of poultry flocks upon the persistence of commensal Campylobacter spp…”
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Testing Language Model Agents Safely in the Wild by Naihin, Silen, Atkinson, David, Green, Marc, Hamadi, Merwane, Swift, Craig, Schonholtz, Douglas, Kalai, Adam Tauman, Bau, David

“…A prerequisite for safe autonomy-in-the-wild is safe testing-in-the-wild. Yet real-world autonomous tests face several unique safety challenges, both due to…”
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