Search Results - "STROMBERG, P"

MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping by Lee, Wan-Ping, Stromberg, Michael P, Ward, Alistair, Stewart, Chip, Garrison, Erik P, Marth, Gabor T

“…MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current…”
Get full text

Pyrobayes: an improved base caller for SNP discovery in pyrosequences by Marth, Gábor T, Quinlan, Aaron R, Stewart, Donald A, Strömberg, Michael P

“…Previously reported applications of the 454 Life Sciences pyrosequencing technology have relied on deep sequence coverage for accurate polymorphism discovery…”
Get full text

Proposal of a 2-Tier Histologic Grading System for Canine Cutaneous Mast Cell Tumors to More Accurately Predict Biological Behavior by Kiupel, M., Webster, J. D., Bailey, K. L., Best, S., DeLay, J., Detrisac, C. J., Fitzgerald, S. D., Gamble, D., Ginn, P. E., Goldschmidt, M. H., Hendrick, M. J., Howerth, E. W., Janovitz, E. B., Langohr, I., Lenz, S. D., Lipscomb, T. P., Miller, M. A., Misdorp, W., Moroff, S., Mullaney, T. P., Neyens, I., O’Toole, D., Ramos-Vara, J., Scase, T. J., Schulman, F. Y., Sledge, D., Smedley, R. C., Smith, K., W. Snyder, P., Southorn, E., Stedman, N. L., Steficek, B. A., Stromberg, P. C., Valli, V. E., Weisbrode, S. E., Yager, J., Heller, J., Miller, R.

“…Currently, prognostic and therapeutic determinations for canine cutaneous mast cell tumors (MCTs) are primarily based on histologic grade. However, the use of…”
Get full text

Rapid whole-genome mutational profiling using next-generation sequencing technologies by Smith, Douglas R, Quinlan, Aaron R, Peckham, Heather E, Makowsky, Kathryn, Tao, Wei, Woolf, Betty, Shen, Lei, Donahue, William F, Tusneem, Nadeem, Stromberg, Michael P, Stewart, Donald A, Zhang, Lu, Ranade, Swati S, Warner, Jason B, Lee, Clarence C, Coleman, Brittney E, Zhang, Zheng, McLaughlin, Stephen F, Malek, Joel A, Sorenson, Jon M, Blanchard, Alan P, Chapman, Jarrod, Hillman, David, Chen, Feng, Rokhsar, Daniel S, McKernan, Kevin J, Jeffries, Thomas W, Marth, Gabor T, Richardson, Paul M

“…Forward genetic mutational studies, adaptive evolution, and phenotypic screening are powerful tools for creating new variant organisms with desirable traits…”
Get full text

Do we need a unified appraisal framework to synthesize biofuel impacts? by Gasparatos, A., Lehtonen, M., Stromberg, P.

“…In the past decade a significant evidence base has been built about biofuels' environmental and socioeconomic impacts. What is still missing is a discussion…”
Get full text

On the Role of CD8 T Cells in the Control of Persistent Infections by Stromberg, Sean P., Antia, Rustom

“…The control of pathogen density during infections is typically assumed to be the result of a combination of resource limitation (loss of target cells that the…”
Get full text

Coevolutionary immune system dynamics driving pathogen speciation by Schlesinger, Kimberly J, Stromberg, Sean P, Carlson, Jean M

“…We introduce and analyze a within-host dynamical model of the coevolution between rapidly mutating pathogens and the adaptive immune response. Pathogen…”
Get full text

Measuring and modeling behavioral decision dynamics in collective evacuation by Carlson, Jean M, Alderson, David L, Stromberg, Sean P, Bassett, Danielle S, Craparo, Emily M, Guiterrez-Villarreal, Francisco, Otani, Thomas

“…Identifying and quantifying factors influencing human decision making remains an outstanding challenge, impacting the performance and predictability of social…”
Get full text

Sox3 expression identifies neural progenitors in persistent neonatal and adult mouse forebrain germinative zones by Wang, Tsu-Wei, Stromberg, Gregory P., Whitney, Justin T., Brower, Nathan W., Klymkowsky, Michael W., Parent, Jack M.

“…Neural precursors persist throughout life in the rodent forebrain subventricular zone (SVZ) and hippocampal dentate gyrus. The regulation of persistent neural…”
Get full text

Severe poisoning after self-reported use of 2-(4-iodo-2,5-dimethoxyphenyl)-N-[(2-methoxyphenyl)methyl]ethanamine, a novel substituted amphetamine: a case series by Hieger, M.A., DO, Rose, S.R., PharmD, Cumpston, K.L., DO, Stromberg, P.E., MD, Miller, S., DO, Wills, B.K., DO

“…Significant toxicity from amphetamine and cathinone derivatives is being increasingly reported. We describe a series of self-reported exposures to…”
Get full text

Vaccination by delayed treatment of infection by Stromberg, Sean P, Antia, Rustom

“…Highlights ► We model how delayed treatment of infections can work as a vaccination. ► Increasing the delay between infection and treatment leads to increasing…”
Get full text

Recommended Guidelines for Submission, Trimming, Margin Evaluation, and Reporting of Tumor Biopsy Specimens in Veterinary Surgical Pathology by Kamstock, D. A., Ehrhart, E. J., Getzy, D. M., Bacon, N. J., Rassnick, K. M., Moroff, S. D., Liu, S. M., Straw, R. C., McKnight, C. A., Amorim, R. L., Bienzle, D., Cassali, G. D., Cullen, J. M., Dennis, M. M., Esplin, D. G., Foster, R. A., Goldschmidt, M. H., Gruber, A. D., Hellmén, E., Howerth, E. W., Labelle, P., Lenz, S. D., Lipscomb, T. P., Locke, E., McGill, L. D., Miller, M. A., Mouser, P. J., O’Toole, D., Pool, R. R., Powers, B. E., Ramos-Vara, J. A., Roccabianca, P., Ross, A. D., Sailasuta, A., Sarli, G., Scase, T. J., Schulman, F. Y., Shoieb, A. M., Singh, K., Sledge, D., Smedley, R. C., Smith, K. C., Spangler, W. L., Steficek, B., Stromberg, P. C., Valli, V. E., Yager, J., Kiupel, M.

“…Neoplastic diseases are typically diagnosed by biopsy and histopathological evaluation. The pathology report is key in determining prognosis, therapeutic…”
Get full text

Necropsy or Autopsy? It’s All About Communication by Law, M., Stromberg, P., Meuten, D., Cullen, J.

Get full text

Robustness and fragility in immunosenescence by Stromberg, Sean P, Carlson, Jean

“…We construct a model to study tradeoffs associated with aging in the adaptive immune system, focusing on cumulative effects of replacing naive cells with…”
Get full text

Oxidation of celecoxib by polymorphic cytochrome P4502C9 and alcohol dehydrogenase by Sandberg, M, Yasar, Ü, Strömberg, P, Höög, JO, Eliasson, E

Get full text

Expression divergence measured by transcriptome sequencing of four yeast species by Busby, Michele A, Gray, Jesse M, Costa, Allen M, Stewart, Chip, Stromberg, Michael P, Barnett, Derek, Chuang, Jeffrey H, Springer, Michael, Marth, Gabor T

“…The evolution of gene expression is a challenging problem in evolutionary biology, for which accurate, well-calibrated measurements and methods are crucial. We…”
Get full text

Correlation of Serum Cardiac Troponin I and Myocardial Damage in Cattle with Monensin Toxicosis by Varga, A, Schober, K.E, Holloman, C.H, Stromberg, P.C, Lakritz, J, Rings, D.M

“…Background: Cardiac troponin I (cTnI) is used as a biomarker of myocardial injury in people and small animals. Little is known about the diagnostic use of cTnI…”
Get full text

Global warming and tropical cyclone damage to housing in the Philippines by Esteban, Miguel, Stromberg, Per, Gasparatos, Alexandros, Thompson-Pomeroy, Dexter

“…It is currently feared that the increase in surface sea temperature resulting from increasing levels of greenhouse gases (GHGs) in the atmosphere could result…”
Get full text

The suppression of immune system disorders by passive attrition by Stromberg, Sean P, Carlson, Jean M

“…Exposure to infectious diseases has an unexpected benefit of inhibiting autoimmune diseases and allergies. This is one of many fundamental fitness tradeoffs…”
Get full text

From Bipeds to an Honorary Member of the American College of Veterinary Pathologists by Meuten, D. J., Law, J. M., Stromberg, P. C., Cullen, J. M.

Get full text