Search Results - "SOROKIN, Anatoly"

FBA-PRCC. Partial Rank Correlation Coefficient (PRCC) Global Sensitivity Analysis (GSA) in Application to Constraint-Based Models by Sorokin, Anatoly, Goryanin, Igor

“…Whole-genome models (GEMs) have become a versatile tool for systems biology, biotechnology, and medicine. GEMs created by automatic and semi-automatic…”
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Mass spectrometry for neurosurgery: Intraoperative support in decision-making by Pekov, Stanislav I, Bormotov, Denis S, Bocharova, Svetlana I, Sorokin, Anatoly A, Derkach, Maria M, Popov, Igor A

“…Ambient ionization mass spectrometry was proved to be a powerful tool for oncological surgery. Still, it remains a translational technique on the way from…”
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Modern machine-learning applications in ambient ionization mass spectrometry by Sorokin, Anatoly A, Pekov, Stanislav I, Zavorotnyuk, Denis S, Shamraeva, Mariya M, Bormotov, Denis S, Popov, Igor A

“…This article provides a comprehensive overview of the applications of methods of machine learning (ML) and artificial intelligence (AI) in ambient ionization…”
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The Edinburgh human metabolic network reconstruction and its functional analysis by Goryanin, Igor, Ma, Hongwu, Sorokin, Anatoly, Mazein, Alexander, Selkov, Alex, Selkov, Evgeni, Demin, Oleg

“…A better understanding of human metabolism and its relationship with diseases is an important task in human systems biology studies. In this paper, we present…”
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Determination of Brain Tissue Samples Storage Conditions for Reproducible Intraoperative Lipid Profiling by Pekov, Stanislav I, Zhvansky, Evgeny S, Eliferov, Vasily A, Sorokin, Anatoly A, Ivanov, Daniil G, Nikolaev, Eugene N, Popov, Igor A

“…Ex-vivo molecular profiling has recently emerged as a promising method for intraoperative tissue identification, especially in neurosurgery. The short-term…”
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Inline cartridge extraction for rapid brain tumor tissue identification by molecular profiling by Pekov, Stanislav I., Eliferov, Vasily A., Sorokin, Anatoly A., Shurkhay, Vsevolod A., Zhvansky, Evgeny S., Vorobyev, Alexander S., Potapov, Alexander A., Nikolaev, Eugene N., Popov, Igor A.

“…The development of perspective diagnostic techniques in medicine requires efficient high-throughput biological sample analysis methods. Here, we present an…”
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Rapid estimation of tumor cell percentage in brain tissue biopsy samples using inline cartridge extraction mass spectrometry by Pekov, Stanislav I., Bormotov, Denis S., Nikitin, Pavel V., Sorokin, Anatoly A., Shurkhay, Vsevolod A., Eliferov, Vasiliy A., Zavorotnyuk, Denis S., Potapov, Alexander A., Nikolaev, Eugene N., Popov, Igor A.

“…Tumor cell percentage (TCP) is an essential characteristic of biopsy samples that directly affects the sensitivity of molecular testing in clinical practice…”
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Genomic analysis and assessment of pathogenic (toxicogenic) potential of Staphylococcus haemolyticus and Bacillus paranthracis consortia isolated from bovine mastitis in Russia by Sokolov, Sergei, Brovko, Fedor, Solonin, Alexander, Nikanova, Daria, Fursova, Ksenia, Artyemieva, Olga, Kolodina, Evgenia, Sorokin, Anatoly, Shchannikova, Margarita, Dzhelyadin, Timur, Ermakov, Artem, Boziev, Khanafy, Zinovieva, Natalia

“…Three stable microbial consortia, each composed of Bacillus paranthracis and Staphylococcus haemolyticus strains, were isolated from milk of cows diagnosed…”
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Interactive Estimation of Heterogeneity from Mass Spectrometry Imaging by Zhvansky, Evgeny S, Ivanov, Daniil G, Sorokin, Anatoly A, Bugrova, Anna E, Nikolaev, Evgeny N, Popov, Igor A

“…In this work, we demonstrate a new approach for interactively assessing hyperspectral data spatial structures for heterogeneity using mass spectrometry…”
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Incorporation of a Disposable ESI Emitter into Inline Cartridge Extraction Mass Spectrometry Improves Throughput and Spectra Stability by Bormotov, Denis S., Eliferov, Vasily A., Peregudova, Olga V., Zavorotnyuk, Denis S., Bocharov, Konstantin V., Pekov, Stanislav I., Sorokin, Anatoly A., Nikolaev, Eugene N., Popov, Igor A.

“…Rapid and reliable methods for detecting tumor margins are crucial for neuro-oncology. Several mass spectrometry-based methods have been recently proposed to…”
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Assessment of variation of inline cartridge extraction mass spectra by Zhvansky, Evgeny S., Eliferov, Vasiliy A., Sorokin, Anatoly A., Shurkhay, Vsevolod A., Pekov, Stanislav I., Bormotov, Denis S., Ivanov, Daniil G., Zavorotnyuk, Denis S., Bocharov, Konstantin V., Khaliullin, Iliyas G., Belenikin, Maksim S., Potapov, Aleksandr A., Nikolaev, Evgeny N., Popov, Igor A.

“…Recently, mass‐spectrometry methods show its utility in tumor boundary location. The effect of differences between research and clinical protocols such as low‐…”
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Potentially Economic Concentrations of Rare Earth Elements and Gold in Power Plant Coal Combustion Products (Far East, Russia) by Dugin, Sergey V., Sorokin, Anatoly P., Kuz’minykh, Valery M., Konyushok, Andrey A.

“…The distribution of rare earth elements (REE) and gold (Au) in fly ash released during combustion of brown coal from the Pereyaslavskoye (Siberia) and…”
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ASAR: visual analysis of metagenomes in R by Orakov, Askarbek N, Sakenova, Nazgul K, Sorokin, Anatoly, Goryanin, Igor I

“…Abstract Motivation Functional and taxonomic analyses are critical steps in understanding interspecific interactions within microbial communities. Currently,…”
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BioNAR: an integrated biological network analysis package in bioconductor by McLean, Colin, Sorokin, Anatoly, Simpson, Thomas Ian, Armstrong, James Douglas, Sorokina, Oksana

“…Abstract Motivation Biological function in protein complexes emerges from more than just the sum of their parts: molecules interact in a range of different…”
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Synaptome.db: a bioconductor package for synaptic proteomics data by Sorokina, Oksana, Sorokin, Anatoly, Armstrong, J Douglas

“…The neuronal synapse is underpinned by a large and diverse proteome but the molecular evidence is spread across many primary datasets. These data were recently…”
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Forest vegetation Interaction with L-band Satellite Signals by Podoprigora, Vladimir, Sorokin, Anatoly

“…A method for calculating the electro-physical parameters of forest vegetation cover interacting with the signals of navigation satellites in the frequency…”
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Structural distinctions of fast and slow bacterial luciferases revealed by phylogenetic analysis by Deeva, Anna A, Temlyakova, Evgenia A, Sorokin, Anatoly A, Nemtseva, Elena V, Kratasyuk, Valentina A

“…Bacterial luciferases are heterodimeric enzymes that catalyze a chemical reaction, so called bioluminescence, which causes light emission in bacteria…”
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Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0 by Rougny, Adrien, Touré, Vasundra, Moodie, Stuart, Balaur, Irina, Czauderna, Tobias, Borlinghaus, Hanna, Dogrusoz, Ugur, Mazein, Alexander, Dräger, Andreas, Blinov, Michael L, Villéger, Alice, Haw, Robin, Demir, Emek, Mi, Huaiyu, Sorokin, Anatoly, Schreiber, Falk, Luna, Augustin

“…The Systems Biology Graphical Notation (SBGN) is an international community effort that aims to standardise the visualisation of pathways and networks for…”
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Software support for SBGN maps: SBGN-ML and LibSBGN by van Iersel, Martijn P, Villéger, Alice C, Czauderna, Tobias, Boyd, Sarah E, Bergmann, Frank T, Luna, Augustin, Demir, Emek, Sorokin, Anatoly, Dogrusoz, Ugur, Matsuoka, Yukiko, Funahashi, Akira, Aladjem, Mirit I, Mi, Huaiyu, Moodie, Stuart L, Kitano, Hiroaki, Le Novère, Nicolas, Schreiber, Falk

“…LibSBGN is a software library for reading, writing and manipulating Systems Biology Graphical Notation (SBGN) maps stored using the recently developed SBGN-ML…”
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Comparative Analysis of Milk Microbiomes and Their Association with Bovine Mastitis in Two Farms in Central Russia by Sokolov, Sergei, Fursova, Ksenia, Shulcheva, Irina, Nikanova, Daria, Artyemieva, Olga, Kolodina, Evgenia, Sorokin, Anatoly, Dzhelyadin, Timur, Shchannikova, Margarita, Shepelyakovskaya, Anna, Zinovieva, Natalia, Brovko, Fedor

“…Bovine mastitis is a widespread infectious disease. In addition to the economic damages associated with reduced milk yield due to mastitis, the problem of food…”
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