Search Results - "SCHROEDER, Steven G"

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome by Bickhart, Derek M, Rosen, Benjamin D, Koren, Sergey, Sayre, Brian L, Hastie, Alex R, Chan, Saki, Lee, Joyce, Lam, Ernest T, Liachko, Ivan, Sullivan, Shawn T, Burton, Joshua N, Huson, Heather J, Nystrom, John C, Kelley, Christy M, Hutchison, Jana L, Zhou, Yang, Sun, Jiajie, Crisà, Alessandra, Ponce de León, F Abel, Schwartz, John C, Hammond, John A, Waldbieser, Geoffrey C, Schroeder, Steven G, Liu, George E, Dunham, Maitreya J, Shendure, Jay, Sonstegard, Tad S, Phillippy, Adam M, Van Tassell, Curtis P, Smith, Timothy P L

“…Adam Phillippy, Curtis Van Tassell, Timothy Smith and colleagues present a new reference genome assembly for the domestic goat using a pipeline that improves…”
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MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection by Sun, Jiajie, Aswath, Kshama, Schroeder, Steven G, Lippolis, John D, Reinhardt, Timothy A, Sonstegard, Tad S

“…Milk exosomes are a rich source of microRNAs (miRNAs) that are protected from degradation. Ingestion of milk and subsequent absorption of miRNAs into recipient…”
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Copy number variation of individual cattle genomes using next-generation sequencing by Bickhart, Derek M, Hou, Yali, Schroeder, Steven G, Alkan, Can, Cardone, Maria Francesca, Matukumalli, Lakshmi K, Song, Jiuzhou, Schnabel, Robert D, Ventura, Mario, Taylor, Jeremy F, Garcia, Jose Fernando, Van Tassell, Curtis P, Sonstegard, Tad S, Eichler, Evan E, Liu, George E

“…Copy number variations (CNVs) affect a wide range of phenotypic traits; however, CNVs in or near segmental duplication regions are often intractable. Using a…”
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Design and validation of a 90K SNP genotyping assay for the water buffalo (Bubalus bubalis) by Iamartino, Daniela, Nicolazzi, Ezequiel L, Van Tassell, Curtis P, Reecy, James M, Fritz-Waters, Eric R, Koltes, James E, Biffani, Stefano, Sonstegard, Tad S, Schroeder, Steven G, Ajmone-Marsan, Paolo, Negrini, Riccardo, Pasquariello, Rolando, Ramelli, Paola, Coletta, Angelo, Garcia, José F, Ali, Ahmad, Ramunno, Luigi, Cosenza, Gianfranco, de Oliveira, Denise A A, Drummond, Marcela G, Bastianetto, Eduardo, Davassi, Alessandro, Pirani, Ali, Brew, Fiona, Williams, John L

“…The availability of the bovine genome sequence and SNP panels has improved various genomic analyses, from exploring genetic diversity to aiding genetic…”
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Genome-wide copy number variant analysis reveals variants associated with 10 diverse production traits in Holstein cattle by Zhou, Yang, Connor, Erin E, Wiggans, George R, Lu, Yongfang, Tempelman, Robert J, Schroeder, Steven G, Chen, Hong, Liu, George E

“…Copy number variation (CNV) is an important type of genetic variation contributing to phenotypic differences among mammals and may serve as an alternative…”
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Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns by Zhou, Yang, Liu, Shuli, Hu, Yan, Fang, Lingzhao, Gao, Yahui, Xia, Han, Schroeder, Steven G, Rosen, Benjamin D, Connor, Erin E, Li, Cong-Jun, Baldwin, Ransom L, Cole, John B, Van Tassell, Curtis P, Yang, Liguo, Ma, Li, Liu, George E

“…Efforts to improve animal health, and understand genetic bases for production, may benefit from a comprehensive analysis of animal genomes and epigenomes…”
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Identification of a nonsense mutation in CWC15 associated with decreased reproductive efficiency in Jersey cattle by Sonstegard, Tad S, Cole, John B, VanRaden, Paul M, Van Tassell, Curtis P, Null, Daniel J, Schroeder, Steven G, Bickhart, Derek, McClure, Matthew C

“…With the recent advent of genomic tools for cattle, several recessive conditions affecting fertility have been identified and selected against, such as…”
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Comparative analyses of sperm DNA methylomes among human, mouse and cattle provide insights into epigenomic evolution and complex traits by Fang, Lingzhao, Zhou, Yang, Liu, Shuli, Jiang, Jicai, Bickhart, Derek M., Null, Daniel J., Li, Bingjie, Schroeder, Steven G., Rosen, Benjamin D., Cole, John B., Van Tassell, Curtis P., Ma, Li, Liu, George E.

“…Sperm DNA methylation is crucial for fertility and viability of offspring but epigenome evolution in mammals is largely understudied. By comparing sperm DNA…”
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Convergent Evolution of Slick Coat in Cattle through Truncation Mutations in the Prolactin Receptor by Porto-Neto, Laercio R, Bickhart, Derek M, Landaeta-Hernandez, Antonio J, Utsunomiya, Yuri T, Pagan, Melvin, Jimenez, Esbal, Hansen, Peter J, Dikmen, Serdal, Schroeder, Steven G, Kim, Eui-Soo, Sun, Jiajie, Crespo, Edward, Amati, Norman, Cole, John B, Null, Daniel J, Garcia, Jose F, Reverter, Antonio, Barendse, William, Sonstegard, Tad S

“…Evolutionary adaptations are occasionally convergent solutions to the same problem. A mutation contributing to a heat tolerance adaptation in Senepol cattle, a…”
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Correction: Solano-Aguilar et al. Fruit and Vegetable Supplemented Diet Modulates the Pig Transcriptome and Microbiome after a Two-Week Feeding Intervention. Nutrients 2021, 13, 4350 by Solano-Aguilar, Gloria I., Lakshman, Sukla, Shao, Jonathan, Chen, Celine, Beshah, Ethiopia, Dawson, Harry D., Vinyard, Bryan, Schroeder, Steven G., Jang, Saebyeol, Molokin, Aleksey, Urban, Joseph F.

“…There was an error in the original publication [...]…”
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Fruit and Vegetable Supplemented Diet Modulates the Pig Transcriptome and Microbiome after a Two-Week Feeding Intervention by Solano-Aguilar, Gloria I, Lakshman, Sukla, Shao, Jonathan, Chen, Celine, Beshah, Ethiopia, Dawson, Harry D, Vinyard, Bryan, Schroeder, Steven G, Jang, Saebyeol, Molokin, Aleksey, Urban, Jr, Joseph F

“…A study was conducted to determine the effects of a diet supplemented with fruits and vegetables (FV) on the host whole blood cell (WBC) transcriptome and the…”
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A Pilot Detection and Associate Study of Gene Presence-Absence Variation in Holstein Cattle by Boschiero, Clarissa, Neupane, Mahesh, Yang, Liu, Schroeder, Steven G, Tuo, Wenbin, Ma, Li, Baldwin, 6th, Ransom L, Van Tassell, Curtis P, Liu, George E

“…Presence-absence variations (PAVs) are important structural variations, wherein a genomic segment containing one or more genes is present in some individuals…”
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Whole genome SNP discovery and analysis of genetic diversity in Turkey (Meleagris gallopavo) by Aslam, Muhammad L, Bastiaansen, John W M, Elferink, Martin G, Megens, Hendrik-Jan, Crooijmans, Richard P M A, Blomberg, Le Ann, Fleischer, Robert C, Van Tassell, Curtis P, Sonstegard, Tad S, Schroeder, Steven G, Groenen, Martien A M, Long, Julie A

“…The turkey (Meleagris gallopavo) is an important agricultural species and the second largest contributor to the world's poultry meat production. Genetic…”
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Gene Expression Analysis of Copper Tolerance and Wood Decay in the Brown Rot Fungus Fibroporia radiculosa by TANG, Juliet D, PARKER, Leslie A, PERKINS, Andy D, SONSTEGARD, Tad S, SCHROEDER, Steven G, NICHOLAS, Darrel D, DIEHL, Susan V

“…Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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Short-Read Sequencing for Genomic Analysis of the Brown Rot Fungus Fibroporia radiculosa by TANG, Juliet D, PERKINS, Andy D, SONSTEGARD, Tad S, SCHROEDER, Steven G, BURGESS, Shane C, DIEHL, Susan V

“…Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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The Effects of Consuming White Button Mushroom Agaricus bisporus on the Brain and Liver Metabolome Using a Targeted Metabolomic Analysis by Solano-Aguilar, Gloria I., Lakshman, Sukla, Jang, Saebyeol, Gupta, Richi, Molokin, Aleksey, Schroeder, Steven G., Gillevet, Patrick M., Urban, Joseph F.

“…A targeted metabolomic analysis was performed on tissues derived from pigs fed diets supplemented with white button mushrooms (WBM) to determine the effect on…”
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Genetic Diversity and Phylogenetic Relationships of Annual and Perennial Glycine Species by Hwang, Eun-Young, Wei, He, Schroeder, Steven G, Fickus, Edward W, Quigley, Charles V, Elia, Patrick, Araya, Susan, Dong, Faming, Costa, Larissa, Ferreira, Marcio Elias, Cregan, Perry B, Song, Qijian

“…We have estimated the average genetic diversity of two annual and six perennial species based upon 76 orthologous gene sets and performed phylogenetic…”
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Integrating Signals from Sperm Methylome Analysis and Genome-Wide Association Study for a Better Understanding of Male Fertility in Cattle by Fang, Lingzhao, Zhou, Yang, Liu, Shuli, Jiang, Jicai, Bickhart, Derek M, Null, Daniel J, Li, Bingjie, Schroeder, Steven G, Rosen, Benjamin D, Cole, John B, Van Tassell, Curtis P, Ma, Li, Liu, George E

“…Decreased male fertility is a big concern in both human society and the livestock industry. Sperm DNA methylation is commonly believed to be associated with…”
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Complete Genome Sequence of a Channel Catfish Epidemic Isolate, Aeromonas hydrophila Strain ML09-119 by Tekedar, Hasan C, Waldbieser, Geoffrey C, Karsi, Attila, Liles, Mark R, Griffin, Matt J, Vamenta, Stefanie, Sonstegard, Tad, Hossain, Mohammad, Schroeder, Steven G, Khoo, Lester, Lawrence, Mark L

“…Aeromonas hydrophila is a Gram-negative, rod-shaped, mesophilic bacterium that infects both aquatic poikilothermic animals and mammals, including humans. Here,…”
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De novo assembly of the cattle reference genome with single-molecule sequencing by Rosen, Benjamin D, Bickhart, Derek M, Schnabel, Robert D, Koren, Sergey, Elsik, Christine G, Tseng, Elizabeth, Rowan, Troy N, Low, Wai Y, Zimin, Aleksey, Couldrey, Christine, Hall, Richard, Li, Wenli, Rhie, Arang, Ghurye, Jay, McKay, Stephanie D, Thibaud-Nissen, Françoise, Hoffman, Jinna, Murdoch, Brenda M, Snelling, Warren M, McDaneld, Tara G, Hammond, John A, Schwartz, John C, Nandolo, Wilson, Hagen, Darren E, Dreischer, Christian, Schultheiss, Sebastian J, Schroeder, Steven G, Phillippy, Adam M, Cole, John B, Van Tassell, Curtis P, Liu, George, Smith, Timothy P L, Medrano, Juan F

“…Abstract Background Major advances in selection progress for cattle have been made following the introduction of genomic tools over the past 10–12 years. These…”
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