Search Results - "Rye, Morten B"

DNA methylation changes in response to neoadjuvant chemotherapy are associated with breast cancer survival by Pedersen, Christine Aaserad, Cao, Maria Dung, Fleischer, Thomas, Rye, Morten B, Knappskog, Stian, Eikesdal, Hans Petter, Lanning, Per Eystein, Tost, Jörg, Kristensen, Vessela N, Tessem, May-Britt, Giskeadegård, Guro F, Bathen, Tone F

“…Background Locally advanced breast cancer is a heterogeneous disease with respect to response to neoadjuvant chemotherapy (NACT) and survival. It is currently…”
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Single cell and spatial transcriptomics highlight the interaction of club-like cells with immunosuppressive myeloid cells in prostate cancer by Kiviaho, Antti, Eerola, Sini K., Kallio, Heini M. L., Andersen, Maria K., Hoikka, Miina, Tiihonen, Aliisa M., Salonen, Iida, Spotbeen, Xander, Giesen, Alexander, Parker, Charles T. A., Taavitsainen, Sinja, Hantula, Olli, Marttinen, Mikael, Hermelo, Ismaïl, Ismail, Mazlina, Midtbust, Elise, Wess, Maximilian, Devlies, Wout, Sharma, Abhibhav, Krossa, Sebastian, Häkkinen, Tomi, Afyounian, Ebrahim, Vandereyken, Katy, Kint, Sam, Kesseli, Juha, Tolonen, Teemu, Tammela, Teuvo L. J., Viset, Trond, Størkersen, Øystein, Giskeødegård, Guro F., Rye, Morten B., Murtola, Teemu, Erickson, Andrew, Latonen, Leena, Bova, G. Steven, Mills, Ian G., Joniau, Steven, Swinnen, Johannes V., Voet, Thierry, Mirtti, Tuomas, Attard, Gerhardt, Claessens, Frank, Visakorpi, Tapio, Rautajoki, Kirsi J., Tessem, May-Britt, Urbanucci, Alfonso, Nykter, Matti

“…Prostate cancer treatment resistance is a significant challenge facing the field. Genomic and transcriptomic profiling have partially elucidated the mechanisms…”
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Spatial differentiation of metabolism in prostate cancer tissue by MALDI-TOF MSI by Andersen, Maria K, Høiem, Therese S, Claes, Britt S R, Balluff, Benjamin, Martin-Lorenzo, Marta, Richardsen, Elin, Krossa, Sebastian, Bertilsson, Helena, Heeren, Ron M A, Rye, Morten B, Giskeødegård, Guro F, Bathen, Tone F, Tessem, May-Britt

“…Prostate cancer tissues are inherently heterogeneous, which presents a challenge for metabolic profiling using traditional bulk analysis methods that produce…”
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Characterization of membrane biofouling at different operating conditions (flux) in drinking water treatment using confocal laser scanning microscopy (CLSM) and image analysis by Sun, Cheng, Fiksdal, Liv, Hanssen-Bauer, Audun, Rye, Morten B., Leiknes, TorOve

“…► Membrane biofouling in drinking water were analyzed by confocal microscopy (CLSM). ► Biofilm structural parameters and biofouling components were…”
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Spatial transcriptomics reveals strong association between SFRP4 and extracellular matrix remodeling in prostate cancer by Andersen, Maria K., Krossa, Sebastian, Midtbust, Elise, Pedersen, Christine A., Wess, Maximilian, Høiem, Therese S., Viset, Trond, Størkersen, Øystein, Nervik, Ingunn, Sandsmark, Elise, Bertilsson, Helena, Giskeødegård, Guro F., Rye, Morten B., Tessem, May-Britt

“…Prostate tumor heterogeneity is a major obstacle when studying the biological mechanisms of molecular markers. Increased gene expression levels of secreted…”
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Norwegian e-Infrastructure for Life Sciences (NeLS) [version 1; peer review: 2 approved] by Tekle, Kidane M, Gundersen, Sveinung, Klepper, Kjetil, Bongo, Lars Ailo, Raknes, Inge Alexander, Li, Xiaxi, Zhang, Wei, Andreetta, Christian, Mulugeta, Teshome Dagne, Kalaš, Matúš, Rye, Morten B, Hjerde, Erik, Antony Samy, Jeevan Karloss, Fornous, Ghislain, Azab, Abdulrahman, Våge, Dag Inge, Hovig, Eivind, Willassen, Nils Peder, Drabløs, Finn, Nygård, Ståle, Petersen, Kjell, Jonassen, Inge

“…The Norwegian e-Infrastructure for Life Sciences (NeLS) has been developed by ELIXIR Norway to provide its users with a system enabling data storage, sharing,…”
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MACPET: model-based analysis for ChIA-PET by Vardaxis, Ioannis, Drabløs, Finn, Rye, Morten B, Lindqvist, Bo Henry

“…We present model-based analysis for ChIA-PET (MACPET), which analyzes paired-end read sequences provided by ChIA-PET for finding binding sites of a protein of…”
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A novel non-canonical Wnt signature for prostate cancer aggressiveness by Sandsmark, Elise, Hansen, Ailin Falkmo, Selnæs, Kirsten M, Bertilsson, Helena, Bofin, Anna M, Wright, Alan J, Viset, Trond, Richardsen, Elin, Drabløs, Finn, Bathen, Tone F, Tessem, May-Britt, Rye, Morten B

“…Activation of the Canonical Wnt pathway (CWP) has been linked to advanced and metastatic prostate cancer, whereas the Wnt5a-induced non-canonical Wnt pathway…”
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SFRP4 gene expression is increased in aggressive prostate cancer by Sandsmark, Elise, Andersen, Maria K., Bofin, Anna M., Bertilsson, Helena, Drabløs, Finn, Bathen, Tone F., Rye, Morten B., Tessem, May-Britt

“…Increased knowledge of the molecular differences between indolent and aggressive prostate cancer is needed for improved risk stratification and treatment…”
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FunHoP: Enhanced Visualization and Analysis of Functionally Homologous Proteins in Complex Metabolic Networks by Rise, Kjersti, Tessem, May-Britt, Drabløs, Finn, Rye, Morten B.

“…Cytoscape is often used for visualization and analysis of metabolic pathways. For example, based on KEGG data, a reader for KEGG Markup Language (KGML) is used…”
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APIM-peptide targeting PCNA improves the efficacy of docetaxel treatment in the TRAMP mouse model of prostate cancer by Søgaard, Caroline K, Moestue, Siver A, Rye, Morten B, Kim, Jana, Nepal, Anala, Liabakk, Nina-Beate, Bachke, Siri, Bathen, Tone F, Otterlei, Marit, Hill, Deborah K

“…Docetaxel is the chemotherapeutic choice for metastatic hormone-refractory prostate cancer, however, it only marginally improves the survival rate. The purpose…”
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The Genomic HyperBrowser: an analysis web server for genome-scale data by Sandve, Geir K, Gundersen, Sveinung, Johansen, Morten, Glad, Ingrid K, Gunathasan, Krishanthi, Holden, Lars, Holden, Marit, Liestøl, Knut, Nygård, Ståle, Nygaard, Vegard, Paulsen, Jonas, Rydbeck, Halfdan, Trengereid, Kai, Clancy, Trevor, Drabløs, Finn, Ferkingstad, Egil, Kalas, Matús, Lien, Tonje, Rye, Morten B, Frigessi, Arnoldo, Hovig, Eivind

“…The immense increase in availability of genomic scale datasets, such as those provided by the ENCODE and Roadmap Epigenomics projects, presents unprecedented…”
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Norwegian e-Infrastructure for Life Sciences (NeLS) by Tekle, Kidane M, Gundersen, Sveinung, Klepper, Kjetil, Bongo, Lars Ailo, Raknes, Inge Alexander, Li, Xiaxi, Zhang, Wei, Andreetta, Christian, Mulugeta, Teshome Dagne, Kalaš, Matúš, Rye, Morten B, Hjerde, Erik, Antony Samy, Jeevan Karloss, Fornous, Ghislain, Azab, Abdulrahman, Våge, Dag Inge, Hovig, Eivind, Willassen, Nils Peder, Drabløs, Finn, Nygård, Ståle, Petersen, Kjell, Jonassen, Inge

“…The Norwegian e-Infrastructure for Life Sciences (NeLS) has been developed by ELIXIR Norway to provide its users with a system enabling data storage, sharing,…”
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The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding by Kornacker, Karl, Rye, Morten Beck, Håndstad, Tony, Drabløs, Finn

“…Chromatin immunoprecipitation combined with high-throughput sequencing (ChIP-Seq) is the most frequently used method to identify the binding sites of…”
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