Search Results - "Ryberg, Martin"

Molecular operational taxonomic units as approximations of species in the light of evolutionary models and empirical data from Fungi by Ryberg, Martin

“…During the last couple of decades, an increasing number of studies use sequence clusters as units for taxonomic diversity. It is well known that such molecular…”
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Structure and function of the global topsoil microbiome by Bahram, Mohammad, Hildebrand, Falk, Forslund, Sofia K., Anderson, Jennifer L., Soudzilovskaia, Nadejda A., Bodegom, Peter M., Bengtsson-Palme, Johan, Anslan, Sten, Coelho, Luis Pedro, Harend, Helery, Huerta-Cepas, Jaime, Medema, Marnix H., Maltz, Mia R., Mundra, Sunil, Olsson, Pål Axel, Pent, Mari, Põlme, Sergei, Sunagawa, Shinichi, Ryberg, Martin, Tedersoo, Leho, Bork, Peer

“…Soils harbour some of the most diverse microbiomes on Earth and are essential for both nutrient cycling and carbon storage. To understand soil functioning, it…”
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A systematic, morphological and ecological overview of the Clavariaceae (Agaricales) by Birkebak, Joshua M., Mayor, Jordan R., Ryberg, K. Martin, Matheny, P. Brandon

“…The Clavariaceae is a diverse family of mushroom-forming fungi composed of species that produce simple clubs, coralloid, lamellate-stipitate, hydnoid and…”
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Ranking higher taxa using divergence times: a case study in Dothideomycetes by Liu, Jian-Kui, Hyde, Kevin D., Jeewon, Rajesh, Phillips, Alan J. L., Maharachchikumbura, Sajeewa S. N., Ryberg, Martin, Liu, Zuo-Yi, Zhao, Qi

“…The current classification system for the recognition of taxonomic ranks among fungi, especially at high-ranking level, is subjective. With the development of…”
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Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data by Bengtsson‐Palme, Johan, Ryberg, Martin, Hartmann, Martin, Branco, Sara, Wang, Zheng, Godhe, Anna, Wit, Pierre, Sánchez‐García, Marisol, Ebersberger, Ingo, Sousa, Filipe, Amend, Anthony, Jumpponen, Ari, Unterseher, Martin, Kristiansson, Erik, Abarenkov, Kessy, Bertrand, Yann J. K., Sanli, Kemal, Eriksson, K. Martin, Vik, Unni, Veldre, Vilmar, Nilsson, R. Henrik, Bunce, Michael

“…Summary The nuclear ribosomal internal transcribed spacer (ITS) region is the primary choice for molecular identification of fungi. Its two highly variable…”
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Asynchronous origins of ectomycorrhizal clades of Agaricales by Ryberg, Martin, Matheny, P. Brandon

“…The ectomycorrhizal (ECM) symbiosis is the most widespread biotrophic nutritional mode in mushroom-forming fungi. ECM fungi include, though are not limited to,…”
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Towards global patterns in the diversity and community structure of ectomycorrhizal fungi by TEDERSOO, LEHO, BAHRAM, MOHAMMAD, TOOTS, MÄRT, DIÉDHIOU, ABDALA G., HENKEL, TERRY W., KJØLLER, RASMUS, MORRIS, MELISSA H., NARA, KAZUHIDE, NOUHRA, EDUARDO, PEAY, KABIR G., PÕLME, SERGEI, RYBERG, MARTIN, SMITH, MATTHEW E., KÕLJALG, URMAS

“…Global species richness patterns of soil micro‐organisms remain poorly understood compared to macro‐organisms. We use a global analysis to disentangle the…”
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A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts by Nilsson, R. Henrik, Tedersoo, Leho, Ryberg, Martin, Kristiansson, Erik, Hartmann, Martin, Unterseher, Martin, Porter, Teresita M., Bengtsson-Palme, Johan, Walker, Donald M., Sousa, Filipe de, Gamper, Hannes Andres, Larsson, Ellen, Larsson, Karl-Henrik, Kõljalg, Urmas, Edgar, Robert C., Abarenkov, Kessy

“…The nuclear ribosomal internal transcribed spacer (ITS) region is the most commonly chosen genetic marker for the molecular identification of fungi in…”
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Impact of model assumptions on the inference of the evolution of ectomycorrhizal symbiosis in fungi by Sheikh, Sanea, Khan, Faheema Kalsoom, Bahram, Mohammad, Ryberg, Martin

“…Ectomycorrhiza (ECM) is a symbiotic relation between plant and fungi that is essential for nutrient uptake of many stand forming trees. There are two…”
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Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective by Nilsson, R Henrik, Ryberg, Martin, Kristiansson, Erik, Abarenkov, Kessy, Larsson, Karl-Henrik, Kõljalg, Urmas

“…DNA sequences are increasingly seen as one of the primary information sources for species identification in many organism groups. Such approaches, popularly…”
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ITS region as a target for characterization of fungal communities using emerging sequencing technologies by Nilsson, Rolf Henrik, Ryberg, Martin, Abarenkov, Kessy, Sjökvist, Elisabet, Kristiansson, Erik

“…The advent of new high-throughput DNA-sequencing technologies promises to redefine the way in which fungi and fungal communities - as well as other groups of…”
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The distance decay of similarity in communities of ectomycorrhizal fungi in different ecosystems and scales by Bahram, Mohammad, Kõljalg, Urmas, Courty, Pierre-Emmanuel, Diédhiou, Abdala G., Kjøller, Rasmus, Põlme, Sergei, Ryberg, Martin, Veldre, Vilmar, Tedersoo, Leho

“…1. Despite recent advances in understanding community ecology of ectomycorrhizal fungi, little is known about their spatial patterning and the underlying…”
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The evolution of ectomycorrhizal symbiosis and host-plant switches are the main drivers for diversification of Amanitaceae (Agaricales, Basidiomycota) by Cai, Qing, Codjia, Jean Evans I, Buyck, Bart, Cui, Yang-Yang, Ryberg, Martin, Yorou, Nourou S, Yang, Zhu L

“…Evolutionary radiation is widely recognized as a mode of species diversification, but the drivers of the rapid diversification of fungi remain largely unknown…”
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Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species Identification by Nilsson, R. Henrik, Kristiansson, Erik, Ryberg, Martin, Hallenberg, Nils, Larsson, Karl-Henrik

“…R. Henrik Nilsson1, Erik Kristiansson2, Martin Ryberg1, Nils Hallenberg1 and Karl-Henrik Larsson1 1Department of Plant and Environmental Sciences, University…”
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New light on names and naming of dark taxa by Ryberg, Martin, Nilsson, R Henrik

“…A growing proportion of fungal species and lineages are known only from sequence data and cannot be linked to any physical specimen or resolved taxonomic name…”
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An evolutionary perspective on morphological and ecological characters in the mushroom family Inocybaceae ( Agaricomycotina, Fungi) by Ryberg, Martin, Larsson, Ellen, Jacobsson, Stig

“…Inocybaceae is one of the larger families among the gilled mushrooms ( Agaricales) but their morphology-based taxonomy is still not fully settled considering…”
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Top 50 most wanted fungi by Nilsson, R. Henrik, Wurzbacher, Christian, Bahram, Mohammad, R. M. Coimbra, Victor, Larsson, Ellen, Tedersoo, Leho, Eriksson, Jonna, Duarte, Camila, Svantesson, Sten, Sánchez-García, Marisol, Ryberg, Martin K., Kristiansson, Erik, Abarenkov, Kessy

“…Environmental sequencing regularly recovers fungi that cannot be classified to any meaningful taxonomic level beyond “ Fungi ”. There are several examples…”
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Cytological studies reveal high variation in ascospore number and shape and conidia produced directly from ascospores in Morchella galilaea by Du, Xi-Hui, Wang, Si-Yue, Ryberg, Martin, Guo, Yong-Jie, Wei, Jing-Yi, Pfister, Donald H., Johannesson, Hanna

“…Spores are important as dispersal and survival propagules in fungi. In this study we investigated the variation in number, shape, size and germination mode of…”
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An Outlook on the Fungal Internal Transcribed Spacer Sequences in GenBank and the Introduction of a Web-Based Tool for the Exploration of Fungal Diversity by Ryberg, Martin, Kristiansson, Erik, Sjökvist, Elisabet, Nilsson, R. Henrik

“…The environmental and distributional data associated with fungal internal transcribed spacer (ITS) sequences in GenBank are investigated and a new web-based…”
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Evolution of the toxins muscarine and psilocybin in a family of mushroom-forming fungi by Kosentka, Pawel, Sprague, Sarah L, Ryberg, Martin, Gartz, Jochen, May, Amanda L, Campagna, Shawn R, Matheny, P Brandon

“…Mushroom-forming fungi produce a wide array of toxic alkaloids. However, evolutionary analyses aimed at exploring the evolution of muscarine, a toxin that…”
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