Search Results - "Russ, Daniel E."

A harmonized atlas of mouse spinal cord cell types and their spatial organization by Russ, Daniel E., Cross, Ryan B. Patterson, Li, Li, Koch, Stephanie C., Matson, Kaya J. E., Yadav, Archana, Alkaslasi, Mor R., Lee, Dylan I., Le Pichon, Claire E., Menon, Vilas, Levine, Ariel J.

“…Single-cell RNA sequencing data can unveil the molecular diversity of cell types. Cell type atlases of the mouse spinal cord have been published in recent…”
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Single cell atlas of spinal cord injury in mice reveals a pro-regenerative signature in spinocerebellar neurons by Matson, Kaya J. E., Russ, Daniel E., Kathe, Claudia, Hua, Isabelle, Maric, Dragan, Ding, Yi, Krynitsky, Jonathan, Pursley, Randall, Sathyamurthy, Anupama, Squair, Jordan W., Levi, Boaz P., Courtine, Gregoire, Levine, Ariel J.

“…After spinal cord injury, tissue distal to the lesion contains undamaged cells that could support or augment recovery. Targeting these cells requires a clearer…”
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Author Correction: A harmonized atlas of mouse spinal cord cell types and their spatial organization by Russ, Daniel E., Cross, Ryan B. Patterson, Li, Li, Koch, Stephanie C., Matson, Kaya J. E., Yadav, Archana, Alkaslasi, Mor R., Lee, Dylan I., Le Pichon, Claire E., Menon, Vilas, Levine, Ariel J.

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Author Correction: A harmonized atlas of mouse spinal cord cell types and their spatial organization by Russ, Daniel E., Cross, Ryan B. Patterson, Li, Li, Koch, Stephanie C., Matson, Kaya J. E., Yadav, Archana, Alkaslasi, Mor R., Lee, Dylan I., Le Pichon, Claire E., Menon, Vilas, Levine, Ariel J.

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Quest markup for developing FAIR questionnaire modules for epidemiologic studies by Russ, Daniel E, Gerlanc, Nicole M, Shen, Brian, Patel, Bhaumik, de González, Amy Berrington, Freedman, Neal D, Cusack, Julie M, Gaudet, Mia M, García-Closas, Montserrat, Almeida, Jonas S

“…Abstract Background Online questionnaires are commonly used to collect information from participants in epidemiological studies. This requires building…”
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Smoking status, usual adult occupation, and risk of recurrent urothelial bladder carcinoma: data from The Cancer Genome Atlas (TCGA) Project by Wilcox, Amber N., Silverman, Debra T., Friesen, Melissa C., Locke, Sarah J., Russ, Daniel E., Hyun, Noorie, Colt, Joanne S., Figueroa, Jonine D., Rothman, Nathaniel, Moore, Lee E., Koutros, Stella

“…Purpose Tobacco smoking and occupational exposures are the leading risk factors for developing urothelial bladder carcinoma (UBC), yet little is known about…”
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Characterization of germline antibody libraries from human umbilical cord blood and selection of monoclonal antibodies to viral envelope glycoproteins: Implications for mechanisms of immune evasion and design of vaccine immunogens by Chen, Weizao, Streaker, Emily D., Russ, Daniel E., Feng, Yang, Prabakaran, Ponraj, Dimitrov, Dimiter S.

“…► We characterized human cord blood IgM antibody libraries by large-scale sequencing. ► Phage Fab library from human cord blood did not yield any binders for…”
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Analysis of somatic hypermutation in X-linked hyper-IgM syndrome shows specific deficiencies in mutational targeting by Longo, Nancy S., Lugar, Patricia L., Yavuz, Sule, Zhang, Wen, Krijger, Peter H.L., Russ, Daniel E., Jima, Dereje D., Dave, Sandeep S., Grammer, Amrie C., Lipsky, Peter E.

“…Subjects with X-linked hyper-IgM syndrome (X-HIgM) have a markedly reduced frequency of CD27+ memory B cells, and their Ig genes have a low level of somatic…”
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Characterization of the Human Ig Heavy Chain Antigen Binding Complementarity Determining Region 3 Using a Newly Developed Software Algorithm, JOINSOLVER by Souto-Carneiro, M. Margarida, Longo, Nancy S, Russ, Daniel E, Sun, Hong-wei, Lipsky, Peter E

“…We analyzed 77 nonproductive and 574 productive human V(H)DJ(H) rearrangements with a newly developed program, JOINSOLVER. In the productive repertoire, the H…”
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Actigraphy-derived measures of sleep and risk of prostate cancer in the UK Biobank by Freeman, Joshua R, Saint-Maurice, Pedro F, Watts, Eleanor L, Moore, Steven C, Shams-White, Marissa M, Wolff-Hughes, Dana L, Russ, Daniel E, Almeida, Jonas S, Caporaso, Neil E, Hong, Hyokyoung G, Loftfield, Erikka, Matthews, Charles E

“…Studies of sleep and prostate cancer are almost entirely based on self-report, with limited research using actigraphy. Our goal was to evaluate…”
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Computer-based coding of free-text job descriptions to efficiently identify occupations in epidemiological studies by Russ, Daniel E, Ho, Kwan-Yuet, Colt, Joanne S, Armenti, Karla R, Baris, Dalsu, Chow, Wong-Ho, Davis, Faith, Johnson, Alison, Purdue, Mark P, Karagas, Margaret R, Schwartz, Kendra, Schwenn, Molly, Silverman, Debra T, Johnson, Calvin A, Friesen, Melissa C

“…BackgroundMapping job titles to standardised occupation classification (SOC) codes is an important step in identifying occupational risk factors in…”
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Simultaneous modeling of detection rate and exposure concentration using semi-continuous models to identify exposure determinants when left-censored data may be a true zero by Friesen, Melissa C., Choo-Wosoba, Hyoyoung, Sarazin, Philippe, Hwang, Jooyeon, Dopart, Pamela, Russ, Daniel E., Deziel, Nicole C., Lavoué, Jérôme, Albert, Paul S., Zhu, Bin

“…Background Most methods for treating left-censored data assume the analyte is present but not quantified. Biased estimates may result if the analyte is absent…”
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HTJoinSolver: Human immunoglobulin VDJ partitioning using approximate dynamic programming constrained by conserved motifs by Russ, Daniel E, Ho, Kwan-Yuet, Longo, Nancy S

“…Partitioning the human immunoglobulin variable region into variable (V), diversity (D), and joining (J) segments is a common sequence analysis step. We…”
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Automated Coding of Job Descriptions From a General Population Study: Overview of Existing Tools, Their Application and Comparison by Wan, Wenxin, Ge, Calvin B, Friesen, Melissa C, Locke, Sarah J, Russ, Daniel E, Burstyn, Igor, Baker, Christopher J O, Adisesh, Anil, Lan, Qing, Rothman, Nathaniel, Huss, Anke, van Tongeren, Martie, Vermeulen, Roel, Peters, Susan

“…Abstract Objectives Automatic job coding tools were developed to reduce the laborious task of manually assigning job codes based on free-text job descriptions…”
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Evaluation of the updated SOCcer v2 algorithm for coding free-text job descriptions in three epidemiologic studies by Russ, Daniel E, Josse, Pabitra, Remen, Thomas, Hofmann, Jonathan N, Purdue, Mark P, Siemiatycki, Jack, Silverman, Debra T, Zhang, Yawei, Lavoué, Jerome, Friesen, Melissa C

“…Abstract Objectives Computer-assisted coding of job descriptions to standardized occupational classification codes facilitates evaluating occupational risk…”
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Computer-Based Coding of Occupation Codes for Epidemiological Analyses by Russ, Daniel E., Kwan-Yuet Ho, Johnson, Calvin A., Friesen, Melissa C.

“…Mapping job titles to standardized occupation classification (SOC) codes is an important step in evaluating changes in health risks over time as measured in…”
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epiDonate - distributed serverless data infrastructure for epidemiological studies by Almeida, Jonas S, Patel, Bhaumik, Russ, Daniel E, Bhawsar, Praphulla, Maurice, Pedro F Saint, Matthews, Charles, Anand, Adit, Ferguson, Martin, Johnson, Davin, Brotzman, Michelle, Gerlanc, Nicole, Chanock, Stephen, de Gonzalez, Amy Berrington, Gaudet, Mia, Garcia-Closas, Montserrat

“…Epidemiological studies face two important challenges: the need to ingest ever more complex data types, and mounting concerns about participant privacy and…”
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