Search Results - "Rudi, Knut"

A game theory model for gut bacterial nutrient utilization strategies during human infancy by Angell, Inga Leena, Rudi, Knut

“…Despite the fact that infant gut colonization patterns have been extensively studied, we have limited knowledge about the underlying ecological processes. This…”
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Investigating antibiotics, antibiotic resistance genes, and microbial contaminants in groundwater in relation to the proximity of urban areas by Szekeres, Edina, Chiriac, Cecilia Maria, Baricz, Andreea, Szőke-Nagy, Tiberiu, Lung, Ildiko, Soran, Maria-Loredana, Rudi, Knut, Dragos, Nicolae, Coman, Cristian

“…Groundwater is an essential public and drinking water supply and its protection is a goal for global policies. Here, we investigated the presence and…”
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Abundance of antibiotics, antibiotic resistance genes and bacterial community composition in wastewater effluents from different Romanian hospitals by Szekeres, Edina, Baricz, Andreea, Chiriac, Cecilia Maria, Farkas, Anca, Opris, Ocsana, Soran, Maria-Loredana, Andrei, Adrian-Stefan, Rudi, Knut, Balcázar, Jose Luis, Dragos, Nicolae, Coman, Cristian

“…Antimicrobial resistance represents a growing and significant public health threat, which requires a global response to develop effective strategies and…”
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Relationships of gut microbiota, short-chain fatty acids, inflammation, and the gut barrier in Parkinson's disease by Aho, Velma T E, Houser, Madelyn C, Pereira, Pedro A B, Chang, Jianjun, Rudi, Knut, Paulin, Lars, Hertzberg, Vicki, Auvinen, Petri, Tansey, Malú G, Scheperjans, Filip

“…Previous studies have reported that gut microbiota, permeability, short-chain fatty acids (SCFAs), and inflammation are altered in Parkinson's disease (PD),…”
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Grand Challenges in Understanding Gut Microbes by Rudi, Knut, Zhao, Liping

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HumGut: a comprehensive human gut prokaryotic genomes collection filtered by metagenome data by Hiseni, Pranvera, Rudi, Knut, Wilson, Robert C., Hegge, Finn Terje, Snipen, Lars

“…Abstract Background A major bottleneck in the use of metagenome sequencing for human gut microbiome studies has been the lack of a comprehensive genome…”
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Metagenome-mining indicates an association between bacteriocin presence and strain diversity in the infant gut by Ormaasen, Ida, Rudi, Knut, Diep, Dzung B, Snipen, Lars

“…Our knowledge about the ecological role of bacterial antimicrobial peptides (bacteriocins) in the human gut is limited, particularly in relation to their role…”
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Early gut mycobiota and mother-offspring transfer by Schei, Kasper, Avershina, Ekaterina, Øien, Torbjørn, Rudi, Knut, Follestad, Turid, Salamati, Saideh, Ødegård, Rønnaug Astri

“…The fungi in the gastrointestinal tract, the gut mycobiota, are now recognised as a significant part of the gut microbiota, and they may be important to human…”
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METASEED: a novel approach to full-length 16S rRNA gene reconstruction from short read data by Philip, Melcy, Rudi, Knut, Ormaasen, Ida, Angell, Inga Leena, Pettersen, Ragnhild, Keeley, Nigel B, Snipen, Lars-Gustav

“…With the emergence of Oxford Nanopore technology, now the on-site sequencing of 16S rRNA from environments is available. Due to the error level and structure,…”
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Lysates of Methylococcus capsulatus Bath induce a lean-like microbiota, intestinal FoxP3+RORγt+IL-17+ Tregs and improve metabolism by Jensen, Benjamin A. H., Holm, Jacob B., Larsen, Ida S., von Burg, Nicole, Derer, Stefanie, Sonne, Si B., Pærregaard, Simone I., Damgaard, Mads V., Indrelid, Stine A., Rivollier, Aymeric, Agrinier, Anne-Laure, Sulek, Karolina, Arnoldussen, Yke J., Fjære, Even, Marette, André, Angell, Inga L., Rudi, Knut, Treebak, Jonas T., Madsen, Lise, Åkesson, Caroline Piercey, Agace, William, Sina, Christian, Kleiveland, Charlotte R., Kristiansen, Karsten, Lea, Tor E.

“…Interactions between host and gut microbial communities are modulated by diets and play pivotal roles in immunological homeostasis and health. We show that…”
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Body fluid prediction from microbial patterns for forensic application by Hanssen, Eirik Nataas, Avershina, Ekaterina, Rudi, Knut, Gill, Peter, Snipen, Lars

“…Highlights • We used saliva deposited on skin as a study model to demonstrate body fluid prediction by standard methods for 16S rRNA gene sequencing and…”
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Mud volcanoes and the presence of PAHs by Remizovschi, Alexei, Carpa, Rahela, Forray, Ferenc L., Chiriac, Cecilia, Roba, Carmen-Andreea, Beldean-Galea, Simion, Andrei, Adrian-Ștefan, Szekeres, Edina, Baricz, Andreea, Lupan, Iulia, Rudi, Knut, Coman, Cristian

“…A mud volcano (MV) is a naturally hydrocarbon-spiked environment, as indicated by the presence of various quantities of PAHs and aromatic isotopic shifts in…”
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Experimental support for multidrug resistance transfer potential in the preterm infant gut microbiota by Hagbø, Mari, Ravi, Anuradha, Angell, Inga Leena, Sunde, Marianne, Ludvigsen, Jane, Diep, Dzung B., Foley, Steven L., Vento, Maximo, Collado, Maria Carmen, Perez-Martinez, Gaspar, Rudi, Knut

“…Background There is currently a lack of experimental evidence for horizontal gene transfer (HGT) mechanisms in the human gut microbiota. The aim of this study…”
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De novo Semi-alignment of 16S rRNA Gene Sequences for Deep Phylogenetic Characterization of Next Generation Sequencing Data by Avershina, Ekaterina, Frisli, Trine, Rudi, Knut

“…We addressed the challenges of analyzing next-generation 16S rRNA gene deep sequencing data from the uncharacterized microbial majority. This was performed…”
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Does Maternal Perinatal Probiotic Supplementation Alter the Intestinal Microbiota of Mother and Child? by Dotterud, Christian K., Avershina, Ekaterina, Sekelja, Monika, Simpson, Melanie R., Rudi, Knut, Storrø, Ola, Johnsen, Roar, Øien, Torbjørn

“…ABSTRACT Objectives: Maternal probiotic supplementation has been shown to prevent the development of atopic dermatitis in the offspring. We aimed to…”
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Convergent temporal dynamics of the human infant gut microbiota by Trosvik, Pål, Stenseth, Nils Christian, Rudi, Knut

“…Temporal dynamics of the human gut microbiota is of fundamental importance for the development of proper gut function and maturation of the immune system. Here…”
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Prediction of high fecal propionate-to-butyrate ratios using 16S rRNA-based detection of bacterial groups with liquid array diagnostics by Hiseni, Pranvera, Snipen, Lars, Wilson, Robert C, Furu, Kari, Hegge, Finn Terje, Rudi, Knut

“…Butyrate and propionate represent two of three main short-chain fatty acids produced by the intestinal microbiota. In healthy populations, their levels are…”
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Association between diet and rumen microbiota in wild roe deer by Wilson, Robert, Østbye, Kjartan, Angell, Inga Leena, Rudi, Knut

“…The association between diet and the rumen microbiota for wild animals remains largely unexplored. Here, we explored this association using a combination of…”
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Questioning the Quality of 16S rRNA Gene Sequences Derived From Human Gut Metagenome-Assembled Genomes by Hiseni, Pranvera, Snipen, Lars, Wilson, Robert C, Furu, Kari, Rudi, Knut

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Effect of probiotics in prevention of atopic dermatitis is dependent on the intrinsic microbiota at early infancy by Avershina, Ekaterina, PhD, Cabrera-Rubio, Raul, PhD, Lundgård, Krister, MSc, Perez-Martinez, Gaspar, PhD, Collado, Maria Carmen, PhD, Storrø, Ola, MD PhD, Øien, Torbjørn, MD PhD, Dotterud, Christian Kvikne, MD PhD, Johnsen, Roar, MD PhD, Rudi, Knut, PhD

“…Abstract Although a link between probiotic intervention and reduction in atopic disease has been documented, no consistent associations with microbiota has yet…”
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