Search Results - "Rubinstein, Amir"

Computational thinking in life science education by Rubinstein, Amir, Chor, Benny

“…We join the increasing call to take computational education of life science students a step further, beyond teaching mere programming and employing existing…”
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Catalyzing Racemizations in the Absence of a Cofactor: The Reaction Mechanism in Proline Racemase by Rubinstein, Amir, Major, Dan Thomas

“…The origin of the catalytic proficiency of the cofactor-independent enzyme proline racemase (ProR) has been investigated by a combined classical and quantum…”
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Interactions between the circadian clock and TGF-β signaling pathway in zebrafish by Sloin, Hadas E, Ruggiero, Gennaro, Rubinstein, Amir, Smadja Storz, Sima, Foulkes, Nicholas S, Gothilf, Yoav

“…TGF-β signaling is a cellular pathway that functions in most cells and has been shown to play a role in multiple processes, such as the immune response, cell…”
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Understanding Catalytic Specificity in Alanine Racemase from Quantum Mechanical and Molecular Mechanical Simulations of the Arginine 219 Mutant by Rubinstein, Amir, Major, Dan Thomas

“…Alanine racemase (AlaR) catalyzes the interconversion between l-Ala and d-Ala with the aid of the cofactor pyridoxal 5′-phosphate (PLP). The pyridine nitrogen…”
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Simulation and visualization of multiple KEGG pathways using BioNSi [version 2; peer review: 2 approved, 1 approved with reservations] by Yeheskel, Adva, Reiter, Adam, Pasmanik-Chor, Metsada, Rubinstein, Amir

“…Motivation: Many biologists are discouraged from using network simulation tools because these require manual, often tedious network construction. This…”
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Faithful modeling of transient expression and its application to elucidating negative feedback regulation by Rubinstein, Amir, Gurevich, Vyacheslav, Kasulin-Boneh, Zohar, Pnueli, Lilach, Kassir, Yona, Pinter, Ron Y

“…Modeling and analysis of genetic regulatory networks is essential both for better understanding their dynamic behavior and for elucidating and refining open…”
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Work in progress - Courses dedicated to the development of logical and algorithmic thinking by Muller, O., Rubinstein, A.

“…Undergraduate students often start their academic course of studies with inadequate learning and thinking skills. Our college has a policy of setting high…”
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A Computational Approach to Study Gene Expression Networks by Rubinstein, Amir, Kassir, Yona

“…We describe a simple computational approach that can be used for the study and simulation of regulatory networks. The advantage of this approach is that it…”
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Computational Thinking in Life Science Education: e1003897 by Rubinstein, Amir, Chor, Benny

“…We join the increasing call to take computational education of life science students a step further, beyond teaching mere programming and employing existing…”
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Computer science for non-technological cyber programs by Rubinstein, Amir

“…The world of cyberspace revolves around the scientific and technological as well as other facets of the internet, data encryption, digital communication,…”
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Aerobic Carbon–Carbon Bond Cleavage of Alkenes to Aldehydes Catalyzed by First-Row Transition-Metal-Substituted Polyoxometalates in the Presence of Nitrogen Dioxide by Rubinstein, Amir, Jiménez-Lozanao, Pablo, Carbó, Jorge J., Poblet, Josep M., Neumann, Ronny

“…A new aerobic carbon–​carbon bond cleavage reaction of linear di-substituted alkenes, to yield the corresponding aldehydes/ketones in high selectivity under…”
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Interactions between the circadian clock and TGF-[beta] signaling pathway in zebrafish by Sloin, Hadas E, Ruggiero, Gennaro, Rubinstein, Amir, Smadja Storz, Sima, Foulkes, Nicholas S, Gothilf, Yoav

“…Background TGF-[beta] signaling is a cellular pathway that functions in most cells and has been shown to play a role in multiple processes, such as the immune…”
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BioNSi: A Discrete Biological Network Simulator Tool by Rubinstein, Amir, Bracha, Noga, Rudner, Liat, Zucker, Noga, Sloin, Hadas E, Chor, Benny

“…Modeling and simulation of biological networks is an effective and widely used research methodology. The Biological Network Simulator (BioNSi) is a tool for…”
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Molecular dynamics simulations of the intramolecular proton transfer and carbanion stabilization in the pyridoxal 5′-phosphate dependent enzymes l-dopa decarboxylase and alanine racemase by Lin, Yen-Lin, Gao, Jiali, Rubinstein, Amir, Major, Dan Thomas

“…Molecular dynamics simulations using a combined quantum mechanical and molecular mechanical (QM/MM) potential have been carried out to investigate the internal…”
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Simulation and visualization of multiple KEGG pathways using BioNSi [version 1; peer review: 1 approved with reservations, 1 not approved] by Yeheskel, Adva, Reiter, Adam, Pasmanik-Chor, Metsada, Rubinstein, Amir

“…Motivation: Many biologists are discouraged from using network simulation tools because these require manual, often tedious network construction. This…”
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The effective application of a discrete transition model to explore cell-cycle regulation in yeast by Rubinstein, Amir, Hazan, Ofir, Chor, Benny, Pinter, Ron Y, Kassir, Yona

“…Bench biologists often do not take part in the development of computational models for their systems, and therefore, they frequently employ them as…”
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The Combination of Nitrogen and Sulfur Oxide Compounds with Transition Metal Substituted Polyoxometalates as a Platform for Novel Catalytic Aerobic Oxidations of Alkenes by Rubinstein, Amir

“…Catalytic oxidation of organic compounds is one of the most industrially important processes. Specifically, our group has a long-standing interest in such…”
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