Search Results - "Rosenbloom, Kate R"

Detection of nonneutral substitution rates on mammalian phylogenies by Pollard, Katherine S, Hubisz, Melissa J, Rosenbloom, Kate R, Siepel, Adam

“…Methods for detecting nucleotide substitution rates that are faster or slower than expected under neutral drift are widely used to identify candidate…”
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The UCSC Genome Browser database: 2018 update by Casper, Jonathan, Zweig, Ann S, Villarreal, Chris, Tyner, Cath, Speir, Matthew L, Rosenbloom, Kate R, Raney, Brian J, Lee, Christopher M, Lee, Brian T, Karolchik, Donna, Hinrichs, Angie S, Haeussler, Maximilian, Guruvadoo, Luvina, Navarro Gonzalez, Jairo, Gibson, David, Fiddes, Ian T, Eisenhart, Christopher, Diekhans, Mark, Clawson, Hiram, Barber, Galt P, Armstrong, Joel, Haussler, David, Kuhn, Robert M, Kent, W James

“…Abstract The UCSC Genome Browser (https://genome.ucsc.edu) provides a web interface for exploring annotated genome assemblies. The assemblies and annotation…”
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The UCSC Genome Browser database: 2022 update by Lee, Brian T, Barber, Galt P, Benet-Pagès, Anna, Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Fischer, Clay, Gonzalez, Jairo Navarro, Hinrichs, Angie S, Lee, Christopher M, Muthuraman, Pranav, Nassar, Luis R, Nguy, Beagan, Pereira, Tiana, Perez, Gerardo, Raney, Brian J, Rosenbloom, Kate R, Schmelter, Daniel, Speir, Matthew L, Wick, Brittney D, Zweig, Ann S, Haussler, David, Kuhn, Robert M, Haeussler, Maximilian, Kent, W James

“…Abstract The UCSC Genome Browser, https://genome.ucsc.edu, is a graphical viewer for exploring genome annotations. The website provides integrated tools for…”
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UCSC Genome Browser enters 20th year by Lee, Christopher M, Barber, Galt P, Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Gonzalez, Jairo Navarro, Hinrichs, Angie S, Lee, Brian T, Nassar, Luis R, Powell, Conner C, Raney, Brian J, Rosenbloom, Kate R, Schmelter, Daniel, Speir, Matthew L, Zweig, Ann S, Haussler, David, Haeussler, Maximilian, Kuhn, Robert M, Kent, W James

“…Abstract The University of California Santa Cruz Genome Browser website (https://genome.ucsc.edu) enters its 20th year of providing high-quality genomics data…”
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ENCODE data in the UCSC Genome Browser: year 5 update by Rosenbloom, Kate R, Sloan, Cricket A, Malladi, Venkat S, Dreszer, Timothy R, Learned, Katrina, Kirkup, Vanessa M, Wong, Matthew C, Maddren, Morgan, Fang, Ruihua, Heitner, Steven G, Lee, Brian T, Barber, Galt P, Harte, Rachel A, Diekhans, Mark, Long, Jeffrey C, Wilder, Steven P, Zweig, Ann S, Karolchik, Donna, Kuhn, Robert M, Haussler, David, Kent, W James

“…The Encyclopedia of DNA Elements (ENCODE), http://encodeproject.org, has completed its fifth year of scientific collaboration to create a comprehensive catalog…”
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Forces shaping the fastest evolving regions in the human genome by Pollard, Katherine S, Salama, Sofie R, King, Bryan, Kern, Andrew D, Dreszer, Tim, Katzman, Sol, Siepel, Adam, Pedersen, Jakob S, Bejerano, Gill, Baertsch, Robert, Rosenbloom, Kate R, Kent, Jim, Haussler, David

“…Comparative genomics allow us to search the human genome for segments that were extensively changed in the last approximately 5 million years since divergence…”
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The UCSC Genome Browser database: 2019 update by Haeussler, Maximilian, Zweig, Ann S, Tyner, Cath, Speir, Matthew L, Rosenbloom, Kate R, Raney, Brian J, Lee, Christopher M, Lee, Brian T, Hinrichs, Angie S, Gonzalez, Jairo Navarro, Gibson, David, Diekhans, Mark, Clawson, Hiram, Casper, Jonathan, Barber, Galt P, Haussler, David, Kuhn, Robert M, Kent, W James

“…Abstract The UCSC Genome Browser (https://genome.ucsc.edu) is a graphical viewer for exploring genome annotations. For almost two decades, the Browser has…”
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The UCSC Genome Browser database: 2021 update by Navarro Gonzalez, Jairo, Zweig, Ann S, Speir, Matthew L, Schmelter, Daniel, Rosenbloom, Kate R, Raney, Brian J, Powell, Conner C, Nassar, Luis R, Maulding, Nathan D, Lee, Christopher M, Lee, Brian T, Hinrichs, Angie S, Fyfe, Alastair C, Fernandes, Jason D, Diekhans, Mark, Clawson, Hiram, Casper, Jonathan, Benet-Pagès, Anna, Barber, Galt P, Haussler, David, Kuhn, Robert M, Haeussler, Maximilian, Kent, W James

“…Abstract For more than two decades, the UCSC Genome Browser database (https://genome.ucsc.edu) has provided high-quality genomics data visualization and genome…”
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The UCSC Genome Browser database: 2017 update by Tyner, Cath, Barber, Galt P, Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Eisenhart, Christopher, Fischer, Clayton M, Gibson, David, Gonzalez, Jairo Navarro, Guruvadoo, Luvina, Haeussler, Maximilian, Heitner, Steve, Hinrichs, Angie S, Karolchik, Donna, Lee, Brian T, Lee, Christopher M, Nejad, Parisa, Raney, Brian J, Rosenbloom, Kate R, Speir, Matthew L, Villarreal, Chris, Vivian, John, Zweig, Ann S, Haussler, David, Kuhn, Robert M, Kent, W James

“…Since its 2001 debut, the University of California, Santa Cruz (UCSC) Genome Browser (http://genome.ucsc.edu/) team has provided continuous support to the…”
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The UCSC Genome Browser database: 2016 update by Speir, Matthew L, Zweig, Ann S, Rosenbloom, Kate R, Raney, Brian J, Paten, Benedict, Nejad, Parisa, Lee, Brian T, Learned, Katrina, Karolchik, Donna, Hinrichs, Angie S, Heitner, Steve, Harte, Rachel A, Haeussler, Maximilian, Guruvadoo, Luvina, Fujita, Pauline A, Eisenhart, Christopher, Diekhans, Mark, Clawson, Hiram, Casper, Jonathan, Barber, Galt P, Haussler, David, Kuhn, Robert M, Kent, W James

“…For the past 15 years, the UCSC Genome Browser (http://genome.ucsc.edu/) has served the international research community by offering an integrated platform for…”
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The UCSC Genome Browser database: 2015 update by Rosenbloom, Kate R, Armstrong, Joel, Barber, Galt P, Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Dreszer, Timothy R, Fujita, Pauline A, Guruvadoo, Luvina, Haeussler, Maximilian, Harte, Rachel A, Heitner, Steve, Hickey, Glenn, Hinrichs, Angie S, Hubley, Robert, Karolchik, Donna, Learned, Katrina, Lee, Brian T, Li, Chin H, Miga, Karen H, Nguyen, Ngan, Paten, Benedict, Raney, Brian J, Smit, Arian F A, Speir, Matthew L, Zweig, Ann S, Haussler, David, Kuhn, Robert M, Kent, W James

“…Launched in 2001 to showcase the draft human genome assembly, the UCSC Genome Browser database (http://genome.ucsc.edu) and associated tools continue to grow,…”
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The UCSC Genome Browser database: 2014 update by Karolchik, Donna, Barber, Galt P, Casper, Jonathan, Clawson, Hiram, Cline, Melissa S, Diekhans, Mark, Dreszer, Timothy R, Fujita, Pauline A, Guruvadoo, Luvina, Haeussler, Maximilian, Harte, Rachel A, Heitner, Steve, Hinrichs, Angie S, Learned, Katrina, Lee, Brian T, Li, Chin H, Raney, Brian J, Rhead, Brooke, Rosenbloom, Kate R, Sloan, Cricket A, Speir, Matthew L, Zweig, Ann S, Haussler, David, Kuhn, Robert M, Kent, W James

“…The University of California Santa Cruz (UCSC) Genome Browser (http://genome.ucsc.edu) offers online public access to a growing database of genomic sequence…”
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The UCSC SARS-CoV-2 Genome Browser by Fernandes, Jason D., Hinrichs, Angie S., Clawson, Hiram, Gonzalez, Jairo Navarro, Lee, Brian T., Nassar, Luis R., Raney, Brian J., Rosenbloom, Kate R., Nerli, Santrupti, Rao, Arjun A., Schmelter, Daniel, Fyfe, Alastair, Maulding, Nathan, Zweig, Ann S., Lowe, Todd M., Ares, Manuel, Corbet-Detig, Russ, Kent, W. James, Haussler, David, Haeussler, Maximilian

“…The UCSC SARS-CoV-2 Genome Browser ( https://genome.ucsc.edu/covid19.html ) is an adaptation of our popular genome-browser visualization tool for this virus,…”
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UCSC Genome Browser database: update 2011 by Fujita, Pauline A, Rhead, Brooke, Zweig, Ann S, Hinrichs, Angie S, Karolchik, Donna, Cline, Melissa S, Goldman, Mary, Barber, Galt P, Clawson, Hiram, Coelho, Antonio, Diekhans, Mark, Dreszer, Timothy R, Giardine, Belinda M, Harte, Rachel A, Hillman-Jackson, Jennifer, Hsu, Fan, Kirkup, Vanessa, Kuhn, Robert M, Learned, Katrina, Li, Chin H, Meyer, Laurence R, Pohl, Andy, Raney, Brian J, Rosenbloom, Kate R, Smith, Kayla E, Haussler, David, Kent, W. James

“…The University of California, Santa Cruz Genome Browser (http://genome.ucsc.edu) offers online access to a database of genomic sequence and annotation data for…”
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Rodent evolution: back to the root by Churakov, Gennady, Sadasivuni, Manoj K, Rosenbloom, Kate R, Huchon, Dorothée, Brosius, Jürgen, Schmitz, Jürgen

“…Some 70 Ma, rodents arose along a branch of our own mammalian lineage. Today, about 40% of all mammalian species are rodents and are found in vast numbers on…”
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UCSC Genome Browser database: update 2010 by Rhead, Brooke, Karolchik, Donna, Kuhn, Robert M, Hinrichs, Angie S, Zweig, Ann S, Fujita, Pauline A, Diekhans, Mark, Smith, Kayla E, Rosenbloom, Kate R, Raney, Brian J, Pohl, Andy, Pheasant, Michael, Meyer, Laurence R, Learned, Katrina, Hsu, Fan, Hillman-Jackson, Jennifer, Harte, Rachel A, Giardine, Belinda, Dreszer, Timothy R, Clawson, Hiram, Barber, Galt P, Haussler, David, Kent, W. James

“…The University of California, Santa Cruz (UCSC) Genome Browser website (http://genome.ucsc.edu/) provides a large database of publicly available sequence and…”
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UCSC Data Integrator and Variant Annotation Integrator by Hinrichs, Angie S, Raney, Brian J, Speir, Matthew L, Rhead, Brooke, Casper, Jonathan, Karolchik, Donna, Kuhn, Robert M, Rosenbloom, Kate R, Zweig, Ann S, Haussler, David, Kent, W James

“…Two new tools on the UCSC Genome Browser web site provide improved ways of combining information from multiple datasets, optionally including the user's own…”
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Variant interpretation: UCSC Genome Browser Recommended Track Sets by Benet‐Pagès, Anna, Rosenbloom, Kate R., Nassar, Luis R., Lee, Christopher M., Raney, Brian J., Clawson, Hiram, Schmelter, Daniel, Casper, Jonathan, Gonzalez, Jairo Navarro, Perez, Gerardo, Lee, Brian T., Zweig, Ann S., Kent, W. James, Haeussler, Maximillian, Kuhn, Robert M.

“…The UCSC Genome Browser has been an important tool for genomics and clinical genetics since the sequence of the human genome was first released in 2000. As it…”
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ENCODE whole-genome data in the UCSC genome browser (2011 update) by Raney, Brian J, Cline, Melissa S, Rosenbloom, Kate R, Dreszer, Timothy R, Learned, Katrina, Barber, Galt P, Meyer, Laurence R, Sloan, Cricket A, Malladi, Venkat S, Roskin, Krishna M, Suh, Bernard B, Hinrichs, Angie S, Clawson, Hiram, Zweig, Ann S, Kirkup, Vanessa, Fujita, Pauline A, Rhead, Brooke, Smith, Kayla E, Pohl, Andy, Kuhn, Robert M, Karolchik, Donna, Haussler, David, Kent, W. James

“…The ENCODE project is an international consortium with a goal of cataloguing all the functional elements in the human genome. The ENCODE Data Coordination…”
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ENCODE whole-genome data in the UCSC Genome Browser by Rosenbloom, Kate R, Dreszer, Timothy R, Pheasant, Michael, Barber, Galt P, Meyer, Laurence R, Pohl, Andy, Raney, Brian J, Wang, Ting, Hinrichs, Angie S, Zweig, Ann S, Fujita, Pauline A, Learned, Katrina, Rhead, Brooke, Smith, Kayla E, Kuhn, Robert M, Karolchik, Donna, Haussler, David, Kent, W. James

“…The Encyclopedia of DNA Elements (ENCODE) project is an international consortium of investigators funded to analyze the human genome with the goal of producing…”
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