Search Results - "Ronning, Catherine"

The sequence of a 1.8-mb bacterial linear plasmid reveals a rich evolutionary reservoir of secondary metabolic pathways by Medema, Marnix H, Trefzer, Axel, Kovalchuk, Andriy, van den Berg, Marco, Müller, Ulrike, Heijne, Wilbert, Wu, Liang, Alam, Mohammad T, Ronning, Catherine M, Nierman, William C, Bovenberg, Roel A L, Breitling, Rainer, Takano, Eriko

“…Plasmids are mobile genetic elements that play a key role in the evolution of bacteria by mediating genome plasticity and lateral transfer of useful genetic…”
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Genetic and phenotypic diversity in Burkholderia: contributions by prophage and phage-like elements by Ronning, Catherine M, Losada, Liliana, Brinkac, Lauren, Inman, Jason, Ulrich, Ricky L, Schell, Mark, Nierman, William C, Deshazer, David

“…Burkholderia species exhibit enormous phenotypic diversity, ranging from the nonpathogenic, soil- and water-inhabiting Burkholderia thailandensis to the…”
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Comparative genomic analysis of fruiting body formation in Myxococcales by Huntley, Stuart, Hamann, Nils, Wegener-Feldbrügge, Sigrun, Treuner-Lange, Anke, Kube, Michael, Reinhardt, Richard, Klages, Sven, Müller, Rolf, Ronning, Catherine M, Nierman, William C, Søgaard-Andersen, Lotte

“…Genetic programs underlying multicellular morphogenesis and cellular differentiation are most often associated with eukaryotic organisms, but examples also…”
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Deductions about the Number, Organization, and Evolution of Genes in the Tomato Genome Based on Analysis of a Large Expressed Sequence Tag Collection and Selective Genomic Sequencing by Van der Hoeven, Rutger, Ronning, Catherine, Giovannoni, James, Martin, Gregory, Tanksley, Steven

“…Analysis of a collection of 120,892 single-pass ESTs, derived from 26 different tomato cDNA libraries and reduced to a set of 27,274 unique consensus sequences…”
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Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release by Haas, Brian J, Wortman, Jennifer R, Ronning, Catherine M, Hannick, Linda I, Smith, Jr, Roger K, Maiti, Rama, Chan, Agnes P, Yu, Chunhui, Farzad, Maryam, Wu, Dongying, White, Owen, Town, Christopher D

“…Since the initial publication of its complete genome sequence, Arabidopsis thaliana has become more important than ever as a model for plant research. However,…”
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A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence by Nandi, Tannistha, Ong, Catherine, Singh, Arvind Pratap, Boddey, Justin, Atkins, Timothy, Sarkar-Tyson, Mitali, Essex-Lopresti, Angela E, Chua, Hui Hoon, Pearson, Talima, Kreisberg, Jason F, Nilsson, Christina, Ariyaratne, Pramila, Ronning, Catherine, Losada, Liliana, Ruan, Yijun, Sung, Wing-Kin, Woods, Donald, Titball, Richard W, Beacham, Ifor, Peak, Ian, Keim, Paul, Nierman, William C, Tan, Patrick

“…Certain environmental microorganisms can cause severe human infections, even in the absence of an obvious requirement for transition through an animal host for…”
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Comprehensive EST analysis of tomato and comparative genomics of fruit ripening by Fei, Z, Tang, X, Alba, R.M, White, J.A, Ronning, C.M, Martin, G.B, Tanksley, S.D, Giovannoni, J.J

“…A large tomato expressed sequence tag (EST) dataset (152 635 total) was analyzed to gain insights into differential gene expression among diverse plant tissues…”
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Insights into the Musa genome: syntenic relationships to rice and between Musa species by Lescot, Magali, Piffanelli, Pietro, Ciampi, Ana Y, Ruiz, Manuel, Blanc, Guillaume, Leebens-Mack, Jim, da Silva, Felipe R, Santos, Candice M R, D'Hont, Angélique, Garsmeur, Olivier, Vilarinhos, Alberto D, Kanamori, Hiroyuki, Matsumoto, Takashi, Ronning, Catherine M, Cheung, Foo, Haas, Brian J, Althoff, Ryan, Arbogast, Tammy, Hine, Erin, Pappas, Jr, Georgios J, Sasaki, Takuji, Souza, Jr, Manoel T, Miller, Robert N G, Glaszmann, Jean-Christophe, Town, Christopher D

“…Musa species (Zingiberaceae, Zingiberales) including bananas and plantains are collectively the fourth most important crop in developing countries. Knowledge…”
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Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements by Losada, Liliana, Ronning, Catherine M, DeShazer, David, Woods, Donald, Fedorova, Natalie, Kim, H Stanley, Shabalina, Svetlana A, Pearson, Talima R, Brinkac, Lauren, Tan, Patrick, Nandi, Tannistha, Crabtree, Jonathan, Badger, Jonathan, Beckstrom-Sternberg, Steve, Saqib, Muhammad, Schutzer, Steven E, Keim, Paul, Nierman, William C

“…Burkholderia mallei (Bm), the causative agent of the predominately equine disease glanders, is a genetically uniform species that is very closely related to…”
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Draft Genome Sequence Determination for Cystic Fibrosis and Chronic Granulomatous Disease Burkholderia multivorans Isolates by Varga, John J, Losada, Liliana, Zelazny, Adrian M, Brinkac, Lauren, Harkins, Derek, Radune, Diana, Hostetler, Jessica, Sampaio, Elizabeth P, Ronning, Catherine M, Nierman, William C, Greenberg, David E, Holland, Steven M, Goldberg, Joanna B

“…Burkholderia multivorans is a Gram-negative bacterium and a member of the Burkholderia cepacia complex, which is frequently associated with respiratory…”
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Genome sequence alterations detected upon passage of Burkholderia mallei ATCC 23344 in culture and in mammalian hosts by Romero, Claudia M, DeShazer, David, Feldblyum, Tamara, Ravel, Jacques, Woods, Donald, Kim, H Stanley, Yu, Yan, Ronning, Catherine M, Nierman, William C

“…More than 12,000 simple sequence repeats (SSRs) have been identified in the genome of Burkholderia mallei ATCC 23344. As a demonstrated mechanism of phase…”
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Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies by Haas, Brian J., Delcher, Arthur L., Mount, Stephen M., Wortman, Jennifer R., Smith Jr, Roger K., Hannick, Linda I., Maiti, Rama, Ronning, Catherine M., Rusch, Douglas B., Town, Christopher D., Salzberg, Steven L., White, Owen

“…The spliced alignment of expressed sequence data to genomic sequence has proven a key tool in the comprehensive annotation of genes in eukaryotic genomes. A…”
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Annotation of the Arabidopsis genome by Wortman, J.R, Haas, B.J, Hannick, L.I, Smith, R.K. Jr, Maiti, R, Ronning, C.M, Chan, A.P, Yu, C, Ayele, M, Whitelaw, C.A

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Characterization of Clinically-Attenuated Burkholderia mallei by Whole Genome Sequencing: Candidate Strain for Exclusion from Select Agent Lists by Schutzer, Steven E, Schlater, Linda R. K, Ronning, Catherine M, DeShazer, David, Luft, Benjamin J, Dunn, John J, Ravel, Jacques, Fraser-Liggett, Claire M, Nierman, William C, Ausubel, Frederick M

“…Burkholderia mallei is an understudied biothreat agent responsible for glanders which can be lethal in humans and animals. Research with this pathogen has been…”
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Gene profiling for studying the mechanism of aflatoxin biosynthesis in Aspergillus flavus and A. parasiticus by Yu, Jiujiang, Ronning, Catherine M, Wilkinson, Jeffery R, Campbell, Bruce C, Payne, Gary A, Bhatnagar, Deepak, Cleveland, Thomas E, Nierman, William C

“…Aflatoxins are toxic and carcinogenic polyketide metabolites produced by certain fungal species, including Aspergillus flavus and A. parasiticus. Many internal…”
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Genomics of Aspergillus fumigatus by Ronning, Catherine M., Fedorova, Natalie D., Bowyer, Paul, Coulson, Richard, Goldman, Gustavo, Stanley Kim, H., Turner, Geoffrey, Wortman, Jennifer R., Yu, Jiujiang, Anderson, Michael J., Denning, David W., Nierman, William C.

“…Aspergillus fumigatus is a filamentous fungal saprophyte that is ubiquitous in the environment. It is also a human pathogen and induces allergenic response,…”
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Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus by Fedorova, Natalie D, Khaldi, Nora, Joardar, Vinita S, Maiti, Rama, Amedeo, Paolo, Anderson, Michael J, Crabtree, Jonathan, Silva, Joana C, Badger, Jonathan H, Albarraq, Ahmed, Angiuoli, Sam, Bussey, Howard, Bowyer, Paul, Cotty, Peter J, Dyer, Paul S, Egan, Amy, Galens, Kevin, Fraser-Liggett, Claire M, Haas, Brian J, Inman, Jason M, Kent, Richard, Lemieux, Sebastien, Malavazi, Iran, Orvis, Joshua, Roemer, Terry, Ronning, Catherine M, Sundaram, Jaideep P, Sutton, Granger, Turner, Geoff, Venter, J Craig, White, Owen R, Whitty, Brett R, Youngman, Phil, Wolfe, Kenneth H, Goldman, Gustavo H, Wortman, Jennifer R, Jiang, Bo, Denning, David W, Nierman, William C

“…We present the genome sequences of a new clinical isolate of the important human pathogen, Aspergillus fumigatus, A1163, and two closely related but rarely…”
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Geographical variation of solanidane aglycone glycoalkaloids in the wild potato species Solanum chacoense Bitter by Ronning, Catherine M, Kowalski, Stanley P, Sanford, Lind L, Stommel, John R

“…The Colorado Potato Beetle is a serious pest of the cultivated potato. Natural resistance has been found in a few wild species, including Solanum chacoense…”
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Structural Flexibility in the Burkholderia mallei Genome by Nierman, William C., DeShazer, David, Kim, H. Stanley, Tettelin, Herve, Nelson, Karen E., Feldblyum, Tamara, Ulrich, Ricky L., Ronning, Catherine M., Brinkac, Lauren M., Daugherty, Sean C., Davidsen, Tanja D., Deboy, Robert T., Dimitrov, George, Dodson, Robert J., Durkin, A. Scott, Gwinn, Michelle L., Haft, Daniel H., Khouri, Hoda, Kolonay, James F., Madupu, Ramana, Mohammoud, Yasmin, Nelson, William C., Radune, Diana, Romero, Claudia M., Sarria, Saul, Selengut, Jeremy, Shamblin, Christine, Sullivan, Steven A., White, Owen, Yu, Yan, Zafar, Nikhat, Zhou, Liwei, Fraser, Claire M., Greenberg, E. Peter

“…The complete genome sequence of Burkholderia mallei ATCC23344 provides insight into this highly infectious bacterium's pathogenicity and evolutionary history…”
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Inheritance of Leptine Production in Solanum chacoense by Ronning, Catherine M, Sanford, Lind L, Stommel, John R

“…Colorado Potato Beetle ( Leptinotarsa decemlineata Say., CPB) is a destructive pest of the cultivated potato, Solanum tuberosum L. Certain glycoalkaloids in…”
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