Search Results - "Rodrigues, Jorge L.M."

Phylogenetic and metagenomic analysis of Verrucomicrobia in former agricultural grassland soil by Kielak, Anna, Rodrigues, Jorge L.M, Kuramae, Eiko E, Chain, Patrick S.G, van Veen, Johannes A, Kowalchuk, George A

“…The bacterial phylum Verrucomicrobia has a widespread distribution, and is known to be one of the most common and diverse phyla in soil habitats. However,…”
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Tropical agricultural land management influences on soil microbial communities through its effect on soil organic carbon by Sul, Woo Jun, Asuming-Brempong, Stella, Wang, Qiong, Tourlousse, Dieter M., Penton, C. Ryan, Deng, Ye, Rodrigues, Jorge L.M., Adiku, Samuel G.K., Jones, James W., Zhou, Jizhong, Cole, James R., Tiedje, James M.

“…We analyzed the microbial community that developed after 4 years of testing different soil-crop management systems in the savannah–forest transition zone of…”
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Towards environmental systems biology of Shewanella by Fredrickson, James K, Tiedje, James M, Romine, Margaret F, Beliaev, Alexander S, Auchtung, Jennifer M, Driscoll, Michael E, Gardner, Timothy S, Nealson, Kenneth H, Osterman, Andrei L, Pinchuk, Grigoriy, Reed, Jennifer L, Rodionov, Dmitry A, Rodrigues, Jorge L. M, Saffarini, Daad A, Serres, Margrethe H, Spormann, Alfred M, Zhulin, Igor B

“…Key Points Shewanella species couple the decomposition of organic matter to the reduction of various terminal electron acceptors that are present in the…”
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Deforestation impacts network co-occurrence patterns of microbial communities in Amazon soils by Khan, M A Wadud, Bohannan, Brendan J M, Nüsslein, Klaus, Tiedje, James M, Tringe, Susannah G, Parlade, Eloi, Barberán, Albert, Rodrigues, Jorge L M

“…ABSTRACT Co-occurrence networks allow for the identification of potential associations among species, which may be important for understanding community…”
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Differential Response of Acidobacteria Subgroups to Forest-to-Pasture Conversion and Their Biogeographic Patterns in the Western Brazilian Amazon by Navarrete, Acacio A, Venturini, Andressa M, Meyer, Kyle M, Klein, Ann M, Tiedje, James M, Bohannan, Brendan J M, Nüsslein, Klaus, Tsai, Siu M, Rodrigues, Jorge L M

“…Members of the phylum Acidobacteria are among the most abundant soil bacteria on Earth, but little is known about their response to environmental changes. We…”
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Belowground changes to community structure alter methane-cycling dynamics in Amazonia by Meyer, Kyle M., Morris, Andrew H., Webster, Kevin, Klein, Ann M., Kroeger, Marie E., Meredith, Laura K., Brændholt, Andreas, Nakamura, Fernanda, Venturini, Andressa, Fonseca de Souza, Leandro, Shek, Katherine L., Danielson, Rachel, van Haren, Joost, Barbosa de Camargo, Plinio, Tsai, Siu Mui, Dini-Andreote, Fernando, de Mauro, José M.S., Barlow, Jos, Berenguer, Erika, Nüsslein, Klaus, Saleska, Scott, Rodrigues, Jorge L.M., Bohannan, Brendan J.M.

“…•Soils from two regions of the Amazon undergo large changes to CH4 cycling following land use change.•Cattle pasture soils exhibit high and variable rates of…”
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Forest-to-pasture conversion increases the diversity of the phylum Verrucomicrobia in Amazon rainforest soils by Ranjan, Kshitij, Paula, Fabiana S, Mueller, Rebecca C, Jesus, Ederson da C, Cenciani, Karina, Bohannan, Brendan J M, Nüsslein, Klaus, Rodrigues, Jorge L M

“…The Amazon rainforest is well known for its rich plant and animal diversity, but its bacterial diversity is virtually unexplored. Due to ongoing and widespread…”
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DNA-Stable Isotope Probing Integrated with Metagenomics for Retrieval of Biphenyl Dioxygenase Genes from Polychlorinated Biphenyl-Contaminated River Sediment by Sul, Woo Jun, Park, Joonhong, Quensen, John F. III, Rodrigues, Jorge L.M, Seliger, Laurie, Tsoi, Tamara V, Zylstra, Gerben J, Tiedje, James M

“…Stable isotope probing with [¹³C]biphenyl was used to explore the genetic properties of indigenous bacteria able to grow on biphenyl in PCB-contaminated River…”
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A Step Forward to Empower Global Microbiome Research Through Local Leadership by Pylro, Victor S, Mui, Tsai S, Rodrigues, Jorge L.M, Andreote, Fernando D, Roesch, Luiz F.W

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Characterization of a bacterial community from a Northeast Siberian seacoast permafrost sample by Hinsa-Leasure, Shannon M, Bhavaraju, Laya, Rodrigues, Jorge L.M, Bakermans, Corien, Gilichinsky, David A, Tiedje, James M

“…A combination of culture-dependent and -independent techniques was used to characterize a bacterial community, examine cold adaptation of isocitrate lyase…”
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Phylogenetic Characterization and Prevalence of "Spirobacillus cienkowskii," a Red-Pigmented, Spiral-Shaped Bacterial Pathogen of Freshwater Daphnia Species by Rodrigues, Jorge L.M, Duffy, Meghan A, Tessier, Alan J, Ebert, Dieter, Mouton, Laurence, Schmidt, Thomas M

“…Microscopic examination of the hemolymph from diseased daphniids in 17 lakes in southwestern Michigan and five rock pools in southern Finland revealed the…”
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Compost amendment maintains soil structure and carbon storage by increasing available carbon and microbial biomass in agricultural soil – A six-year field study by Wang, Daoyuan, Lin, Jonathan Y., Sayre, Jordan M., Schmidt, Radomir, Fonte, Steven J., Rodrigues, Jorge L.M., Scow, Kate M.

“…•Compost amendments to tilled row crop increased SOM contents.•Long-term compost input enhanced macroaggregate formation.•Long-term compost input was…”
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Soil fungal taxonomic and functional community composition as affected by biochar properties by Dai, Zhongmin, Enders, Akio, Rodrigues, Jorge L.M., Hanley, Kelly L., Brookes, Philip C., Xu, Jianming, Lehmann, Johannes

“…Biochar greatly influences the soil bacterial community and nutrient transformations, while our knowledge of the responses of fungal lifestyles to biochar is…”
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Use of both 16S rRNA and engineered functional genes with real-time PCR to quantify an engineered, PCB-degrading Rhodococcus in soil by Rodrigues, Jorge L.M, Aiello, Michael R, Urbance, John W, Tsoi, Tamara V, Tiedje, James M

“…A real-time PCR (RTm-PCR) assay using fluorescently labeled oligonucleotides (TaqMan probes) was used to detect and quantify the recombinant Rhodococcus sp…”
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Soil phosphorus cycling across a 100‐year deforestation chronosequence in the Amazon rainforest by Xu, Suwei, Gu, Chunhao, Rodrigues, Jorge L. M., Li, Chongyang, Bohannan, Brendan, Nüsslein, Klaus, Margenot, Andrew J.

“…Deforestation of tropical rainforests is a major land use change that alters terrestrial biogeochemical cycling at local to global scales. Deforestation and…”
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Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities by Rodrigues, Jorge L. M., Pellizari, Vivian H., Mueller, Rebecca, Baek, Kyunghwa, da C. Jesus, Ederson, Paula, Fabiana S., Mirza, Babur, Hamaoui, George S., Tsai, Siu Mui, Feigl, Brigitte, Tiedje, James M., Bohannan, Brendan J. M., Nüsslein, Klaus

“…The Amazon rainforest is the Earth’s largest reservoir of plant and animal diversity, and it has been subjected to especially high rates of land use change,…”
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Soil microbial community dynamics and assembly under long-term land use change by Goss-Souza, Dennis, Mendes, Lucas William, Borges, Clovis Daniel, Baretta, Dilmar, Tsai, Siu Mui, Rodrigues, Jorge L M

“…We evaluated the bacterial and archaeal community dynamics and assembly in soils under forest, grassland and no-till cropping, using a high-throughput shotgun…”
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Amazon forest-to-agriculture conversion alters rhizosphere microbiome composition while functions are kept by Goss-Souza, Dennis, Mendes, Lucas William, Borges, Clovis Daniel, Rodrigues, Jorge L M, Tsai, Siu Mui

“…The conversion of native forest to agriculture is the main cause of microbial biodiversity loss in Amazon soils. In order to better understand this effect, we…”
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Soil microbial communities in restored and unrestored coastal dune ecosystems in California by Parsons, Lorraine S., Sayre, Jordan, Ender, Cody, Rodrigues, Jorge L. M., Barberán, Albert

“…Most restoration projects involving invasive plant eradication tend to focus on plant removal with little consideration given to how these invasives change…”
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composite bacteriophage alters colonization by an intestinal commensal bacterium by Duerkop, Breck A, Clements, Charmaine V, Rollins, Darcy, Rodrigues, Jorge L. M, Hooper, Lora V

“…The mammalian intestine is home to a dense community of bacteria and its associated bacteriophage (phage). Virtually nothing is known about how phages impact…”
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