Search Results - "Rodrigues, Andria V."

Accurate prediction of protein structures and interactions using a three-track neural network by Baek, Minkyung, DiMaio, Frank, Anishchenko, Ivan, Dauparas, Justas, Ovchinnikov, Sergey, Lee, Gyu Rie, Wang, Jue, Cong, Qian, Kinch, Lisa N, Schaeffer, R Dustin, Millán, Claudia, Park, Hahnbeom, Adams, Carson, Glassman, Caleb R, DeGiovanni, Andy, Pereira, Jose H, Rodrigues, Andria V, van Dijk, Alberdina A, Ebrecht, Ana C, Opperman, Diederik J, Sagmeister, Theo, Buhlheller, Christoph, Pavkov-Keller, Tea, Rathinaswamy, Manoj K, Dalwadi, Udit, Yip, Calvin K, Burke, John E, Garcia, K Christopher, Grishin, Nick V, Adams, Paul D, Read, Randy J, Baker, David

“…DeepMind presented notably accurate predictions at the recent 14th Critical Assessment of Structure Prediction (CASP14) conference. We explored network…”
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Cleavage and polyadenylation specificity factor 30: An RNA-binding zinc-finger protein with an unexpected 2Fe–2S cluster by Shimberg, Geoffrey D., Michalek, Jamie L., Oluyadi, Abdulafeez A., Rodrigues, Andria V., Zucconi, Beth E., Neu, Heather M., Ghosh, Shanchari, Sureschandra, Kanisha, Wilson, Gerald M., Stemmler, Timothy L., Michel, Sarah L. J.

“…Cleavage and polyadenylation specificity factor 30 (CPSF30) is a key protein involved in pre-mRNA processing. CPSF30 contains five Cys₃His domains (annotated…”
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Insight into the Mechanism of Phenylacetate Decarboxylase (PhdB), a Toluene‐Producing Glycyl Radical Enzyme by Rodrigues, Andria V., Tantillo, Dean J., Mukhopadhyay, Aindrila, Keasling, Jay D., Beller, Harry R.

“…We recently reported the discovery of phenylacetate decarboxylase (PhdB), representing one of only ten glycyl‐radical‐enzyme reaction types known, and a…”
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Characterization of lignin-degrading enzyme PmdC, which catalyzes a key step in the synthesis of polymer precursor 2-pyrone-4,6-dicarboxylic acid by Rodrigues, Andria V., Moriarty, Nigel W., Kakumanu, Ramu, DeGiovanni, Andy, Pereira, Jose Henrique, Gin, Jennifer W., Chen, Yan, Baidoo, Edward E.K., Petzold, Christopher J., Adams, Paul D.

“…Pyrone-2,4-dicarboxylic acid (PDC) is a valuable polymer precursor that can be derived from the microbial degradation of lignin. The key enzyme in the…”
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Drosophila melanogaster frataxin: protein crystal and predicted solution structure with identification of the iron‐binding regions by Rodrigues, Andria V., Batelu, Sharon, Hinton, Tiara V., Rotondo, John, Thompson, Lindsey, Brunzelle, Joseph S., Stemmler, Timothy L.

“…Friedreich's ataxia (FRDA) is a hereditary cardiodegenerative and neurodegenerative disease that affects 1 in 50 000 Americans. FRDA arises from either a…”
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Discovery of enzymes for toluene synthesis from anoxic microbial communities by Beller, Harry R., Rodrigues, Andria V., Zargar, Kamrun, Wu, Yu-Wei, Saini, Avneesh K., Saville, Renee M., Pereira, Jose H., Adams, Paul D., Tringe, Susannah G., Petzold, Christopher J., Keasling, Jay D.

“…Microbial toluene biosynthesis was reported in anoxic lake sediments more than three decades ago, but the enzyme catalyzing this biochemically challenging…”
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Synthesis of Co(II)-NO(-) Complexes and Their Reactivity as a Source of Nitroxyl by Walter, Melody R, Dzul, Stephen P, Rodrigues, Andria V, Stemmler, Timothy L, Telser, Joshua, Conradie, Jeanet, Ghosh, Abhik, Harrop, Todd C

“…Metal-nitroxyl (M-HNO/M-NO(-)) coordination units are found in denitrification enzymes of the global nitrogen cycle, and free HNO exhibits pharmacological…”
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Unique roles of iron and zinc binding to the yeast Fe-S cluster scaffold assembly protein "Isu1" by Lewis, Brianne E, Mason, Zachary, Rodrigues, Andria V, Nuth, Manunya, Dizin, Eric, Cowan, J. A, Stemmler, Timothy L

“…Mitochondrial Fe-S cluster biosynthesis is accomplished within yeast utilizing the biophysical attributes of the "Isu1" scaffold assembly protein. As a member…”
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Discovery of novel geranylgeranyl reductases and characterization of their substrate promiscuity by Meadows, Corey W, Mingardon, Florence, Garabedian, Brett M, Baidoo, Edward E K, Benites, Veronica T, Rodrigues, Andria V, Abourjeily, Raya, Chanal, Angelique, Lee, Taek Soon

“…Geranylgeranyl reductase (GGR) is a flavin-containing redox enzyme that hydrogenates a variety of unactivated polyprenyl substrates, which are further…”
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Iron chaperones for mitochondrial Fe–S cluster biosynthesis and ferritin iron storage by Subramanian, Poorna, Rodrigues, Andria V, Ghimire-Rijal, Sudipa, Stemmler, Timothy L

“…Protein controlled iron homeostasis is essential for maintaining appropriate levels and availability of metal within cells. Recently, two iron chaperones have…”
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Iron loading site on the Fe–S cluster assembly scaffold protein is distinct from the active site by Rodrigues, Andria V., Kandegedara, Ashoka, Rotondo, John A., Dancis, Andrew, Stemmler, Timothy L.

“…Iron–sulfur (Fe–S) cluster containing proteins are utilized in almost every biochemical pathway. The unique redox and coordination chemistry associated with…”
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Backbone resonance assignments and secondary structure of the apo-Drosophila melanogaster frataxin homolog (Dfh) by Rawat, Swati, Kondapalli, Kalyan C., Rodrigues, Andria V., Stemmler, Timothy L.

“…Friedreich’s ataxia, the most prevalent hereditary ataxia, is caused by a patient’s inability to produce a viable form of the protein frataxin. Frataxin plays…”
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Proton-Induced Reactivity of NO– from a {CoNO}8 Complex by Rhine, Melody A, Rodrigues, Andria V, Urbauer, Ramona J. Bieber, Urbauer, Jeffrey L, Stemmler, Timothy L, Harrop, Todd C

“…Research on the one-electron reduced analogue of NO, namely nitroxyl (HNO/NO–), has revealed distinguishing properties regarding its utility as a therapeutic…”
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Synthesis of Co II –NO – Complexes and Their Reactivity as a Source of Nitroxyl by Walter, Melody R., Dzul, Stephen P., Rodrigues, Andria V., Stemmler, Timothy L., Telser, Joshua, Conradie, Jeanet, Ghosh, Abhik, Harrop, Todd C.

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Proton-Induced Reactivity of NO¿ from a {CoNO}(8) Complex by Rhine, M., Rodrigues, A., Urbauer, R., Urbauer, J., Stemmler, T., Harrop, T.

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Accurate prediction of protein structures and interactions using a 3-track neural network by Baek, Minkyung, DiMaio, Frank, Anishchenko, Ivan, Dauparas, Justas, Ovchinnikov, Sergey, Lee, Gyu Rie, Wang, Jue, Cong, Qian, Kinch, Lisa N., Schaeffer, R. Dustin, Millán, Claudia, Park, Hahnbeom, Adams, Carson, Glassman, Caleb R., DeGiovanni, Andy, Pereira, Jose H., Rodrigues, Andria V., van Dijk, Alberdina A., Ebrecht, Ana C., Opperman, Diederik J., Sagmeister, Theo, Buhlheller, Christoph, Pavkov-Keller, Tea, Rathinaswamy, Manoj K, Dalwadi, Udit, Yip, Calvin K, Burke, John E, Garcia, K. Christopher, Grishin, Nick V., Adams, Paul D., Read, Randy J., Baker, David

“…DeepMind presented remarkably accurate predictions at the recent CASP14 protein structure prediction assessment conference. We explored network architectures…”
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Characterization of initial iron binding location and the structure/iron binding site on S. cerevisiae isu and on D. melanogaster frataxin by Rodrigues, Andria V

“…Iron-induced free radical damage has been implicated in the pathology of diseases of iron overload such as Friedreich's Ataxia, a genetic disorder…”
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Synthesis of CoII–NO– Complexes and Their Reactivity as a Source of Nitroxyl by Walter, Melody R, Dzul, Stephen P, Rodrigues, Andria V, Stemmler, Timothy L, Telser, Joshua, Conradie, Jeanet, Ghosh, Abhik, Harrop, Todd C

“…Metal-nitroxyl (M–HNO/M–NO–) coordination units are found in denitrification enzymes of the global nitrogen cycle, and free HNO exhibits pharmacological…”
Get full text