Search Results - "Rodney A. King"

Structural basis of transcriptional regulation by a nascent RNA element, HK022 putRNA by Hwang, Seungha, Olinares, Paul Dominic B., Lee, Jimin, Kim, Jinwoo, Chait, Brian T., King, Rodney A., Kang, Jin Young

“…Transcription, in which RNA polymerases (RNAPs) produce RNA from DNA, is the first step of gene expression. As such, it is highly regulated either by trans…”
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Whole genome sequencing identifies an allele responsible for clear vs. turbid plaque morphology in a Mycobacteriophage by Gudlavalleti, Bhavani S, Phung, Trong, Barton, Charles L, Becker, Allysson, Graul, Brittany L, Griffin, Jarod T, Hays, Connor J, Horn, Bailey, Liang, David R, Rutledge, Lauren M, Szalanczy, Alexandria M, Gaffney, Bobby L, King, Rodney A, Rinehart, Claire A, Staples, Amanda K, Stewart, Alexander A, Nydam, Marie L, O'Quin, Kelly E

“…Abstract Background Whole genome sequencing promises to revolutionize our ability to link genotypic and phenotypic variation in a wide range of model and…”
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Inhibition of a Transcriptional Pause by RNA Anchoring to RNA Polymerase by Komissarova, Natalia, Velikodvorskaya, Tatiana, Sen, Ranjan, King, Rodney A., Banik-Maiti, Sarbani, Weisberg, Robert A.

“…We describe a mechanism by which nascent RNA inhibits transcriptional pausing. PutL RNA of bacteriophage HK022 suppresses transcription termination at…”
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Newly Discovered Antiterminator RNAs in Bacteriophage by King, Rodney A, Wright, Alice, Miles, Courtney, Pendleton, Christopher S, Ebelhar, Andrew, Lane, Stephanie, Parthasarathy, Prasanna Tamarapu

“…Antiterminator RNA directly modifies the transcription elongation complex so that it terminates less efficiently at intrinsic and factor-dependent terminators…”
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Isolation and Characterization of Phages That Bypass the Requirement for RNA-Mediated Antitermination by King, Rodney A, Babbs, Millicent, Baugh, Kimberly, Hamilton, Courtney

“…The Y75N mutation in the zinc-binding domain of the β' subunit of RNA polymerase blocks the RNA-based mechanism of transcription antitermination utilized by…”
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Suppression of Factor-Dependent Transcription Termination by Antiterminator RNA by King, Rodney A, Weisberg, Robert A

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Sequence Analysis of a Hybrid HK022/λ Bacteriophage and the Precise Identification of the λ b515 and λ b519 Deletion Endpoints by King, Rodney A, Perez, Meghan T

“…Bacteriophage O276 is a laboratory-generated hybrid that carries the immunity region of bacteriophage HK022 and all remaining genes from phage λ. Its…”
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Characterization of Salmonella Bacteriophages Isolated from Swine Lagoon Effluent by McLaughlin, Michael R, King, Rodney A

“…Four Salmonella bacteriophages that had been originally isolated from swine manure lagoons were characterized and compared to each other and to well-known…”
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The HHMI National Genomics Research Initiative at Western Kentucky University by King, Rodney A, Rinehart, Claire, Parthasarathy, Prasanna Tamarapu

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Constitutive Expression of a Transcription Termination Factor by a Repressed Prophage: Promoters for Transcribing the Phage HK022 nun Gene by King, R A, Madsen, P L, Weisberg, R A

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Complete Genome Sequences of 44 Arthrobacter Phages by Klyczek, Karen K, Jacobs-Sera, Deborah, Adair, Tamarah L, Adams, Sandra D, Ball, Sarah L, Benjamin, Robert C, Bonilla, J Alfred, Breitenberger, Caroline A, Daniels, Charles J, Gaffney, Bobby L, Harrison, Melinda, Hughes, Lee E, King, Rodney A, Krukonis, Gregory P, Lopez, A Javier, Monsen-Collar, Kirsten, Pizzorno, Marie C, Rinehart, Claire A, Staples, Amanda K, Stowe, Emily L, Garlena, Rebecca A, Russell, Daniel A, Cresawn, Steven G, Pope, Welkin H, Hatfull, Graham F

“…We report here the complete genome sequences of 44 phages infecting sp. strain ATCC 21022. These phages have double-stranded DNA genomes with sizes ranging…”
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Protection of antiterminator RNA by the transcript elongation complex by Sloan, Sieghild, Rutkai, Edit, King, Rodney A, Velikodvorskaya, Tatyana, Weisberg, Robert A

“…Nascent transcripts encoded by the putL and putR sites of phage HK022 bind the transcript elongation complex and suppress termination at downstream…”
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Genome Sequences of Subcluster K5 Mycobacteriophages AlleyCat, Edugator, and Guillsminger by King, Rodney A, Slowan-Pomeroy, Tina M, Thomas, Jodi E, Ahmed, Tithe, Alexander, Katie L, Biddle, James M, Daniels, Makenzie K, Rowlett, Jenna R, Senay, Taylor E, Rinehart, Claire A, Staples, Amanda K, Rowland, Naomi S, Gaffney, Bobby L, Emmons, Christine B, Hauk, Maya D, Nguyen, Rebecca L, Naegele, Leonard, Strickland, Summer S, Briggs, Laura A, Rush, Alexander N, Saha, Sanghamitra, Sadana, Rachna, Cresawn, Steven G, Russell, Daniel A, Garlena, Rebecca A, Pope, Welkin H, Jacobs-Sera, Deborah, Hatfull, Graham F

“…Bacteriophages AlleyCat, Edugator, and Guillsminger were isolated on mc 155 from enriched soil samples. All are members of mycobacteriophage subcluster K5,…”
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A Conserved Zinc Binding Domain in the Largest Subunit of DNA-dependent RNA Polymerase Modulates Intrinsic Transcription Termination and Antitermination but does not Stabilize the Elongation Complex by King, Rodney A., Markov, Dmitry, Sen, Ranjan, Severinov, Konstantin, Weisberg, Robert A.

“…An evolutionarily conserved zinc-binding motif is found close to the amino terminus of the largest subunits of DNA-dependent RNA polymerases from bacteria,…”
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Modification of the Properties of Elongating RNA Polymerase by Persistent Association with Nascent Antiterminator RNA by Sen, Ranjan, King, Rodney A, Weisberg, Robert A

“…Nascent RNA encoded by putL, a cis-acting antitermination site of bacteriophage HK022, increases readthrough of terminators by directly modifying the…”
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Using a lac repressor roadblock to analyze the E. coli transcription elongation complex by King, Rodney A, Sen, Ranjan, Weisberg, Robert A

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Sequence‐specific interaction of nascent antiterminator RNA with the zinc‐finger motif of Escherichia coli RNA polymerase by Sen, Ranjan, King, Rodney A., Mzhavia, Nino, Madsen, Peter L., Weisberg, Robert A.

“…Summary The N‐terminal Zn‐finger motif of the β′ subunit of RNA polymerase contains two pairs of invariant cysteines flanking a moderately well‐conserved…”
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Transcripts That Increase the Processivity and Elongation Rate of RNA Polymerase by King, Rodney A, Banik-Maiti, Sarbani, Jin, Ding Jun, Weisberg, Robert A

“…Transcripts encoded by the cis-acting antitermination sites ( put sites) of lambdoid phage HK022 promote readthrough of downstream transcription terminators…”
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A broadly implementable research course in phage discovery and genomics for first-year undergraduate students by Jordan, Tuajuanda C, Burnett, Sandra H, Carson, Susan, Caruso, Steven M, Clase, Kari, DeJong, Randall J, Dennehy, John J, Denver, Dee R, Dunbar, David, Elgin, Sarah C R, Findley, Ann M, Gissendanner, Chris R, Golebiewska, Urszula P, Guild, Nancy, Hartzog, Grant A, Grillo, Wendy H, Hollowell, Gail P, Hughes, Lee E, Johnson, Allison, King, Rodney A, Lewis, Lynn O, Li, Wei, Rosenzweig, Frank, Rubin, Michael R, Saha, Margaret S, Sandoz, James, Shaffer, Christopher D, Taylor, Barbara, Temple, Louise, Vazquez, Edwin, Ware, Vassie C, Barker, Lucia P, Bradley, Kevin W, Jacobs-Sera, Deborah, Pope, Welkin H, Russell, Daniel A, Cresawn, Steven G, Lopatto, David, Bailey, Cheryl P, Hatfull, Graham F

“…Engaging large numbers of undergraduates in authentic scientific discovery is desirable but difficult to achieve. We have developed a general model in which…”
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The antiterminator RNA of phage HK022 by Banik-Maiti, Sarbani, King, Rodney A, Weisberg, Robert A

“…The put sites of phage HK022 increase the processivity of transcription and thereby promote the expression of viral genes that are located downstream of…”
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