Search Results - "Riley, David"

Ten years of pan-genome analyses by Vernikos, George, Medini, Duccio, Riley, David R, Tettelin, Hervé

“…Highlights • Next generation sequencing technologies have enabled large-scale genome analyses. • Pan-genome analyses provide a framework for predicting and…”
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CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing by Angiuoli, Samuel V, Matalka, Malcolm, Gussman, Aaron, Galens, Kevin, Vangala, Mahesh, Riley, David R, Arze, Cesar, White, James R, White, Owen, Fricke, W Florian

“…Next-generation sequencing technologies have decentralized sequence acquisition, increasing the demand for new bioinformatics tools that are easy to use,…”
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Integrated Management of Tomato Yellow Leaf Curl Virus and its Whitefly Vector in Tomato by Riley, David G., Srinivasan, Rajagopalbabu

“…Whitefly-transmitted Tomato yellow leaf curl virus (Family Geminiviridae; Genus Begomovirus) severely restricts tomato production in the Southeastern United…”
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Bacteria-human somatic cell lateral gene transfer is enriched in cancer samples by Riley, David R, Sieber, Karsten B, Robinson, Kelly M, White, James Robert, Ganesan, Ashwinkumar, Nourbakhsh, Syrus, Dunning Hotopp, Julie C

“…There are 10× more bacterial cells in our bodies from the microbiome than human cells. Viral DNA is known to integrate in the human genome, but the integration…”
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Comparative genomics: the bacterial pan-genome by Tettelin, Hervé, Riley, David, Cattuto, Ciro, Medini, Duccio

“…Bacterial genome sequencing has become so easy and accessible that the genomes of multiple strains of more and more individual species have been and will be…”
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CARE guidelines for case reports: explanation and elaboration document by Riley, David S, Barber, Melissa S, Kienle, Gunver S, Aronson, Jeffrey K, von Schoen-Angerer, Tido, Tugwell, Peter, Kiene, Helmut, Helfand, Mark, Altman, Douglas G, Sox, Harold, Werthmann, Paul G, Moher, David, Rison, Richard A, Shamseer, Larissa, Koch, Christian A, Sun, Gordon H, Hanaway, Patrick, Sudak, Nancy L, Kaszkin-Bettag, Marietta, Gagnier, Joel J, Carpenter, James E

“…Abstract Background Well-written and transparent case reports (1) reveal early signals of potential benefits, harms, and information on the use of resources;…”
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The Spectrum of Disease in Chronic Traumatic Encephalopathy by McKee, Ann C, Stein, Thor D, Nowinski, Christopher J, Stern, Robert A, Daneshvar, Daniel H, Alvarez, Victor E, Lee, Hyo-Soon, Hall, Garth, Wojtowicz, Sydney M, Baugh, Christine M, Riley, David O, Kubilus, Caroline A, Cormier, Kerry A, Jacobs, Matthew A, Martin, Brett R, Abraham, Carmela R, Ikezu, Tsuneya, Reichard, Robert Ross, Wolozin, Benjamin L, Budson, Andrew E, Goldstein, Lee E, Kowall, Neil W, Cantu, Robert C

“…Chronic traumatic encephalopathy is a progressive tauopathy that occurs as a consequence of repetitive mild traumatic brain injury. We analysed post-mortem…”
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Criteria for the diagnosis of corticobasal degeneration by ARMSTRONG, Melissa J, LITVAN, Irene, JOSEPHS, Keith A, KERTESZ, Andrew, LEE, Suzee E, MILLER, Bruce L, REICH, Stephen G, RILEY, David E, TOLOSA, Eduardo, TROSTER, Alexander I, VIDAILHET, Marie, WEINER, William J, LANG, Anthony E, BAK, Thomas H, BHATIA, Kailash P, BORRONI, Barbara, BOXER, Adam L, DICKSON, Dennis W, GROSSMAN, Murray, HALLETT, Mark

“…Current criteria for the clinical diagnosis of pathologically confirmed corticobasal degeneration (CBD) no longer reflect the expanding understanding of this…”
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Direct detection of early-stage cancers using circulating tumor DNA by Phallen, Jillian, Sausen, Mark, Adleff, Vilmos, Leal, Alessandro, Hruban, Carolyn, White, James, Anagnostou, Valsamo, Fiksel, Jacob, Cristiano, Stephen, Papp, Eniko, Speir, Savannah, Reinert, Thomas, Orntoft, Mai-Britt Worm, Woodward, Brian D, Murphy, Derek, Parpart-Li, Sonya, Riley, David, Nesselbush, Monica, Sengamalay, Naomi, Georgiadis, Andrew, Li, Qing Kay, Madsen, Mogens Rørbæk, Mortensen, Frank Viborg, Huiskens, Joost, Punt, Cornelis, van Grieken, Nicole, Fijneman, Remond, Meijer, Gerrit, Husain, Hatim, Scharpf, Robert B, Diaz, Jr, Luis A, Jones, Siân, Angiuoli, Sam, Ørntoft, Torben, Nielsen, Hans Jørgen, Andersen, Claus Lindbjerg, Velculescu, Victor E

“…Early detection and intervention are likely to be the most effective means for reducing morbidity and mortality of human cancer. However, development of…”
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Personalized genomic analyses for cancer mutation discovery and interpretation by Jones, Siân, Anagnostou, Valsamo, Lytle, Karli, Parpart-Li, Sonya, Nesselbush, Monica, Riley, David R, Shukla, Manish, Chesnick, Bryan, Kadan, Maura, Papp, Eniko, Galens, Kevin G, Murphy, Derek, Zhang, Theresa, Kann, Lisa, Sausen, Mark, Angiuoli, Samuel V, Diaz, Jr, Luis A, Velculescu, Victor E

“…Massively parallel sequencing approaches are beginning to be used clinically to characterize individual patient tumors and to select therapies based on the…”
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Long-term Consequences of Repetitive Brain Trauma: Chronic Traumatic Encephalopathy by Stern, Robert A., PhD, Riley, David O., BS, Daneshvar, Daniel H., MA, Nowinski, Christopher J., BA, Cantu, Robert C., MD, McKee, Ann C., MD

“…Abstract Chronic traumatic encephalopathy (CTE) has been linked to participation in contact sports such as boxing and American football. CTE results in a…”
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The CARE Guidelines: Consensus-Based Clinical Case Reporting Guideline Development by Gagnier, Joel J., Kienle, Gunver, Altman, Douglas G., Moher, David, Sox, Harold, Riley, David

“…Background A case report is a narrative that describes, for medical, scientific, or educational purposes, a medical problem experienced by one or more…”
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Augmenting DMTA using predictive AI modelling at AstraZeneca by Ghiandoni, Gian Marco, Evertsson, Emma, Riley, David J., Tyrchan, Christian, Rathi, Prakash Chandra

“…•The evolution of the design-make-test-analyse (DMTA) cycle, mainly within AstraZeneca, but also generalizing in the context of drug discovery, is…”
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Novel genes involved in the genetic architecture of temperament in Brahman cattle by Paredes-Sánchez, Francisco Alejandro, Sifuentes-Rincón, Ana María, Casas, Eduardo, Arellano-Vera, Williams, Parra-Bracamonte, G. Manuel, Riley, David G, Welsh, Thomas H, Randel, Ronald D, Mateescu, Raluca

“…Cattle temperament is a complex and economically relevant trait. The objective of this study was to identify genomic regions and genes associated with cattle…”
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Love is in the hair: arginine methylation of human hair proteins as novel cardiovascular biomarkers by Marsden, Alistair James, Riley, David R. J., Birkett, Stefan, Rodriguez-Barucg, Quentin, Guinn, Barbara-ann, Carroll, Sean, Ingle, Lee, Sathyapalan, Thozhukat, Beltran-Alvarez, Pedro

“…Cardiovascular disease is the major cause of death worldwide. Extensive cardiovascular biomarkers are available using blood tests but very few, if any,…”
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The membrane-associated fraction of cyclase associate protein 1 translocates to the cytosol upon platelet stimulation by Joshi, Pooja, Riley, David R. J., Khalil, Jawad S., Xiong, Huajiang, Ji, Wei, Rivero, Francisco

“…Platelets undergo profound shape changes upon adhesion to damaged blood vessel walls that are mediated by reorganisation of the actin cytoskeleton in response…”
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Parallel evolution of Streptococcus pneumoniae and Streptococcus mitis to pathogenic and mutualistic lifestyles by Kilian, Mogens, Riley, David R, Jensen, Anders, Brüggemann, Holger, Tettelin, Hervé

“…The bacterium Streptococcus pneumoniae is one of the leading causes of fatal infections affecting humans. Intriguingly, phylogenetic analysis shows that the…”
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Sustainable performance criteria for construction method selection in concrete buildings by Chen, Ying, Okudan, Gül E., Riley, David R.

“…The use of prefabrication offers significant advantages, yet appropriate criteria for applicability assessments to a given building have been found to be…”
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A Review of Successes and Impeding Challenges of IoT-Based Insect Pest Detection Systems for Estimating Agroecosystem Health and Productivity of Cotton by Kiobia, Denis O, Mwitta, Canicius J, Fue, Kadeghe G, Schmidt, Jason M, Riley, David G, Rains, Glen C

“…Using artificial intelligence (AI) and the IoT (Internet of Things) is a primary focus of applied engineering research to improve agricultural efficiency. This…”
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The synergistic impact of type 2 diabetes and MASLD on cardiovascular, liver, diabetes‐related and cancer outcomes by Riley, David R., Hydes, Theresa, Hernadez, Gema, Zhao, Sizheng S., Alam, Uazman, Cuthbertson, Daniel J.

“…Background and Aims We examined the impact of a co‐diagnosis of metabolic dysfunction‐associated steatotic liver disease (MASLD) and type 2 diabetes (T2D) on…”
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