Search Results - "Rice, Daniel L."

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    Nightingale: web components for protein feature visualization by Salazar, Gustavo A, Luciani, Aurélien, Watkins, Xavier, Kandasaamy, Swaathi, Rice, Daniel L, Blum, Matthias, Bateman, Alex, Martin, Maria

    Published in Bioinformatics advances (01-01-2023)
    “…Abstract Motivation The visualization of biological data is a fundamental technique that enables researchers to understand and explain biology. Some of these…”
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    Journal Article
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    UniProt: the Universal Protein Knowledgebase in 2023 by Bateman, Alex, Martin, Maria-Jesus, Orchard, Sandra, Magrane, Michele, Ahmad, Shadab, Alpi, Emanuele, Bowler-Barnett, Emily H, Britto, Ramona, Bye-A-Jee, Hema, Cukura, Austra, Denny, Paul, Dogan, Tunca, Ebenezer, ThankGod, Fan, Jun, Garmiri, Penelope, da Costa Gonzales, Leonardo Jose, Hatton-Ellis, Emma, Hussein, Abdulrahman, Ignatchenko, Alexandr, Insana, Giuseppe, Ishtiaq, Rizwan, Joshi, Vishal, Jyothi, Dushyanth, Kandasaamy, Swaathi, Lock, Antonia, Luciani, Aurelien, Lugaric, Marija, Luo, Jie, Lussi, Yvonne, MacDougall, Alistair, Madeira, Fabio, Mahmoudy, Mahdi, Mishra, Alok, Moulang, Katie, Nightingale, Andrew, Pundir, Sangya, Qi, Guoying, Raj, Shriya, Raposo, Pedro, Rice, Daniel L, Saidi, Rabie, Santos, Rafael, Speretta, Elena, Stephenson, James, Totoo, Prabhat, Turner, Edward, Tyagi, Nidhi, Vasudev, Preethi, Warner, Kate, Watkins, Xavier, Zaru, Rossana, Zellner, Hermann, Bridge, Alan J, Aimo, Lucila, Argoud-Puy, Ghislaine, Auchincloss, Andrea H, Axelsen, Kristian B, Bansal, Parit, Baratin, Delphine, Batista Neto, Teresa M, Blatter, Marie-Claude, Bolleman, Jerven T, Boutet, Emmanuel, Breuza, Lionel, Gil, Blanca Cabrera, Casals-Casas, Cristina, Echioukh, Kamal Chikh, Coudert, Elisabeth, Cuche, Beatrice, de Castro, Edouard, Estreicher, Anne, Famiglietti, Maria L, Feuermann, Marc, Gasteiger, Elisabeth, Gaudet, Pascale, Gehant, Sebastien, Gerritsen, Vivienne, Gos, Arnaud, Gruaz, Nadine, Hulo, Chantal, Hyka-Nouspikel, Nevila, Jungo, Florence, Kerhornou, Arnaud, Le Mercier, Philippe, Lieberherr, Damien, Masson, Patrick, Morgat, Anne, Muthukrishnan, Venkatesh, Paesano, Salvo, Pedruzzi, Ivo, Pilbout, Sandrine, Pourcel, Lucille, Poux, Sylvain, Pozzato, Monica, Pruess, Manuela, Redaschi, Nicole, Rivoire, Catherine, Sigrist, Christian J A, Sonesson, Karin, Sundaram, Shyamala

    Published in Nucleic acids research (06-01-2023)
    “…The aim of the UniProt Knowledgebase is to provide users with a comprehensive, high-quality and freely accessible set of protein sequences annotated with…”
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    HLA-DQA105 Carriage Associated With Development of Anti-Drug Antibodies to Infliximab and Adalimumab in Patients With Crohn’s Disease by Kennedy, Nicholas A., Moutsianas, Loukas, Heap, Graham A., Chanchlani, Neil, Walker, Gareth J., Perry, Mandy H., Lees, Charlie W., Parkes, Miles, Mansfield, John C., McGovern, Dermot, Ahmad, Tariq, Patel, Vinod, Mazhar, Zia, Colleypriest, Ben, Weaver, Sean, Preston, Cathryn, Butt, Assad, Smith, Melissa, Beale, Amanda, Langlands, Sarah, Direkze, Natalie, Torrente, Franco, De La Revella Negro, Juan, Ewen MacDonald, Chris, Evans, Stephen M, Gunasekera, Anton V J, Thakur, Alka, Elphick, David, Shenoy, Achuth, Agrawal, Anurag, Bridger, Stephen, Cooper, Sheldon C, de Silva, Shanika, Mowat, Craig, Mayhead, Phillip, Lees, Charlie, Ahmad, Tariq, Russell, Richard K, Gervais, Lisa, Dunckley, Paul, Mahmood, Tariq, Banim, Paul J R, Sonwalkar, Sunil, Ghosh, Deb, Phillips, Rosemary H, Azaz, Amer, Sebastian, Shaji, Shenderey, Richard, Armstrong, Lawrence, Bell, Claire, Hariraj, Radhakrishnan, Matthews, Helen, Jafferbhoy, Hasnain, Selinger, Christian P, Willmott, Anne, Bloom, Stuart L, Chung-Faye, Guy, Harbord, Marcus, Hart, Ailsa, Lindsay, James O, Mawdsley, Joel E, McNair, Alistair, Murray, Charles D, Paul, Thankam, Pollok, Richard, Shah, Neil, Johnson, Matt W, Modi, Anita, Dawa Kabiru, Kasamu, Baburajan, B K, Bhaduri, Bim, Adebayo Fagbemi, Andrew, Limdi, Jimmy K, Ramadas, Arvind, MacFaul, George, Mansfield, John, Morris, Mary-Anne, Tremelling, Mark, Hawkey, Chris, Charlton, Charles PJ, Rodrigues, Astor, Snook, Jonathon, De Silva, Aminda N, Smith, Mark S, Panter, Simon, Cummings, Fraser, Mahmood, Zahid, Sen, Sandip, Pigott, Anna J, Hobday, David, Wesley, Emma, Beckly, John, Vani, Deven, Ramakrishnan, Subramaniam, Chaudhary, Rakesh, Trudgill, Nigel J, Cooney, Rachel, Bell, Andy, Li, Andy, Gore, Stephen

    Published in Gastroenterology (New York, N.Y. 1943) (01-01-2020)
    “…Anti–tumor necrosis factor (anti-TNF) therapies are the most widely used biologic drugs for treating immune-mediated diseases, but repeated administration can…”
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    Annotation of biologically relevant ligands in UniProtKB using ChEBI by Coudert, Elisabeth, Gehant, Sebastien, de Castro, Edouard, Pozzato, Monica, Baratin, Delphine, Neto, Teresa, Sigrist, Christian J A, Redaschi, Nicole, Bridge, Alan

    Published in Bioinformatics (Oxford, England) (01-01-2023)
    “…Abstract Motivation To provide high quality, computationally tractable annotation of binding sites for biologically relevant (cognate) ligands in UniProtKB…”
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    Large-scale sequencing identifies multiple genes and rare variants associated with Crohn’s disease susceptibility by Stevens, Christine R., Venkataraman, Guhan R., Avila, Brandon, Abreu, Maria T., Ahmad, Tariq, Allez, Matthieu, Ananthakrishnan, Ashwin N., Barrett, Jeffrey C., Barzilai, Nir, Beaugerie, Laurent, Beecham, Ashley, Bokemeyer, Bernd, Chan, Andrew, Cleynen, Isabelle, Cosnes, Jacques, Cutler, David J., Daly, Allan, Damas, Oriana M., Datta, Lisa W., Dawany, Noor, Devoto, Marcella, Dodge, Sheila, Ellinghaus, Eva, Farkkila, Martti, Faubion, William, Ferreira, Manuel, Gabriel, Stacey B., Ge, Tian, Georges, Michel, Gettler, Kyle, Giri, Mamta, Goyette, Philippe, Graham, Daniel, Hämäläinen, Eija, Haritunians, Talin, Heap, Graham A., Hiltunen, Mikko, Hoeppner, Marc, Horowitz, Julie E., Iyer, Vivek, Kelsen, Judith, Khalili, Hamed, Kirschner, Barbara S., Koskela, Jukka T., Kugathasan, Subra, Kupcinskas, Juozas, Laudes, Matthias, Levine, Adam P., Liefferinckx, Claire, Loescher, Britt-Sabina, Louis, Edouard, Mansfield, John, May, Sandra, McCauley, Jacob L., Mengesha, Emebet, Mni, Myriam, Moayyedi, Paul, Newberry, Rodney D., Okou, David T., Ostrer, Harry, Paquette, Jean, Pekow, Joel, Pierik, Marieke J., Ponsioen, Cyriel Y., Pontikos, Nikolas, Prescott, Natalie, Pulver, Ann E., Rahmouni, Souad, Sands, Bruce, Sartor, R. Balfour, Schiff, Elena R., Schreiber, Stefan, Schumm, L. Philip, Segal, Anthony W., Seksik, Philippe, Sheikh, Shehzad Z., Silverberg, Mark S., Simmons, Alison, Skeiceviciene, Jurgita, Sokol, Harry, Solomonson, Matthew, Somineni, Hari, Sun, Dylan, Targan, Stephan, Turner, Dan, van der Meulen, Andrea E., Vermeire, Séverine, Verstockt, Sare, Voskuil, Michiel D., Duerr, Richard H., Franke, Andre, Brant, Steven R., Cho, Judy, Parkes, Miles, Xavier, Ramnik J., Rivas, Manuel A., Rioux, John D., McGovern, Dermot P. B., Huang, Hailiang, Anderson, Carl A.

    Published in Nature genetics (01-09-2022)
    “…Genome-wide association studies (GWASs) have identified hundreds of loci associated with Crohn’s disease (CD). However, as with all complex diseases, robust…”
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    Perspectives on tracking data reuse across biodata resources by Ross, Karen E, Bastian, Frederic B, Buys, Matt, Cook, Charles E, D'Eustachio, Peter, Harrison, Melissa, Hermjakob, Henning, Li, Donghui, Lord, Phillip, Natale, Darren A, Peters, Bjoern, Sternberg, Paul W, Su, Andrew I, Thakur, Matthew, Thomas, Paul D, Bateman, Alex

    Published in Bioinformatics advances (2024)
    “…Data reuse is a common and vital practice in molecular biology and enables the knowledge gathered over recent decades to drive discovery and innovation in the…”
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    Journal Article
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    MBDBMetrics: an online metrics tool to measure the impact of biological data resources by Insana, Giuseppe, Ignatchenko, Alex, Martin, Maria, Bateman, Alex

    Published in Bioinformatics advances (2023)
    “…Abstract Motivation There now exist thousands of molecular biology databases covering every aspect of biological data. This database infrastructure takes…”
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    Journal Article