Search Results - "Ricci, William A"

The prevalence, evolution and chromatin signatures of plant regulatory elements by Lu, Zefu, Marand, Alexandre P., Ricci, William A., Ethridge, Christina L., Zhang, Xiaoyu, Schmitz, Robert J.

“…Chromatin accessibility and modification is a hallmark of regulatory DNA, the study of which led to the discovery of cis -regulatory elements (CREs). Here, we…”
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Public Service by a Selfish Gene: A Domesticated Transposase Antagonizes Polycomb Function by Ricci, William A, Zhang, Xiaoyu

“…Members of the PIF/Harbinger superfamily share several characteristics: they have short terminal inverted repeats (TIRs), prefer to insert into 3-bp target…”
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Leveraging histone modifications to improve genome annotations by Mendieta, John Pablo, Marand, Alexandre P, Ricci, William A, Zhang, Xuan, Schmitz, Robert J

“…Genome annotations are an invaluable resource, and their accuracy is critical to the research community. We demonstrate that epigenomic data can be leveraged…”
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Identification of cis-regulatory elements by chromatin structure by Lu, Zefu, Ricci, William A, Schmitz, Robert J, Zhang, Xiaoyu

“…•cis-regulatory elements are enriched within accessible chromatin regions (ACRs).•Sequence variation within ACRs disproportionately affects…”
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Genome-Wide Profiling of Histone Modifications with ChIP-Seq by Ricci, William A, Levin, Laura, Zhang, Xiaoyu

“…Chromatin immunoprecipitation coupled with sequencing (ChIP-seq) is a widely used method for mapping the genome-wide locations of chromatin-associated…”
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Warm temperature-triggered developmental reprogramming requires VIL1-mediated, genome-wide H3K27me3 accumulation in Arabidopsis by Kim, Junghyun, Bordiya, Yogendra, Xi, Yanpeng, Zhao, Bo, Kim, Dong-Hwan, Pyo, Youngjae, Zong, Wei, Ricci, William A, Sung, Sibum

“…Changes in ambient temperature immensely affect developmental programs in many species. Plants adapt to high ambient growth temperature in part by vegetative…”
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Maize centromeric chromatin scales with changes in genome size by Wang, Na, Liu, Jianing, Ricci, William A, Gent, Jonathan I, Dawe, R Kelly

“…Abstract Centromeres are defined by the location of Centromeric Histone H3 (CENP-A/CENH3) which interacts with DNA to define the locations and sizes of…”
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Widespread long-range cis-regulatory elements in the maize genome by Ricci, William A., Lu, Zefu, Ji, Lexiang, Marand, Alexandre P., Ethridge, Christina L., Murphy, Nathalie G., Noshay, Jaclyn M., Galli, Mary, Mejía-Guerra, María Katherine, Colomé-Tatché, Maria, Johannes, Frank, Rowley, M. Jordan, Corces, Victor G., Zhai, Jixian, Scanlon, Michael J., Buckler, Edward S., Gallavotti, Andrea, Springer, Nathan M., Schmitz, Robert J., Zhang, Xiaoyu

“…Genetic mapping studies on crops suggest that agronomic traits can be controlled by gene–distal intergenic loci. Despite the biological importance and the…”
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Dimerization and thiol sensitivity of the salicylic acid binding thimet oligopeptidases TOP1 and TOP2 define their functions in redox-sensitive cellular pathways by Westlake, Timothy J, Ricci, William A, Popescu, George V, Popescu, Sorina C

“…A long-term goal in plant research is to understand how plants integrate signals from multiple environmental stressors. The importance of salicylic acid (SA)…”
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Author Correction: Widespread long-range cis-regulatory elements in the maize genome by Ricci, William A., Lu, Zefu, Ji, Lexiang, Marand, Alexandre P., Ethridge, Christina L., Murphy, Nathalie G., Noshay, Jaclyn M., Galli, Mary, Mejía-Guerra, María Katherine, Colomé-Tatché, Maria, Johannes, Frank, Rowley, M. Jordan, Corces, Victor G., Zhai, Jixian, Scanlon, Michael J., Buckler, Edward S., Gallavotti, Andrea, Springer, Nathan M., Schmitz, Robert J., Zhang, Xiaoyu

“…An amendment to this paper has been published and can be accessed via a link at the top of the paper…”
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De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes by Hufford, Matthew B, Seetharam, Arun S, Woodhouse, Margaret R, Chougule, Kapeel M, Ou, Shujun, Liu, Jianing, Ricci, William A, Guo, Tingting, Olson, Andrew, Qiu, Yinjie, Della Coletta, Rafael, Tittes, Silas, Hudson, Asher I, Marand, Alexandre P, Wei, Sharon, Lu, Zhenyuan, Wang, Bo, Tello-Ruiz, Marcela K, Piri, Rebecca D, Wang, Na, Kim, Dong Won, Zeng, Yibing, O'Connor, Christine H, Li, Xianran, Gilbert, Amanda M, Baggs, Erin, Krasileva, Ksenia V, Portwood, 2nd, John L, Cannon, Ethalinda K S, Andorf, Carson M, Manchanda, Nancy, Snodgrass, Samantha J, Hufnagel, David E, Jiang, Qiuhan, Pedersen, Sarah, Syring, Michael L, Kudrna, David A, Llaca, Victor, Fengler, Kevin, Schmitz, Robert J, Ross-Ibarra, Jeffrey, Yu, Jianming, Gent, Jonathan I, Hirsch, Candice N, Ware, Doreen, Dawe, R Kelly

“…We report de novo genome assemblies, transcriptomes, annotations, and methylomes for the 26 inbreds that serve as the founders for the maize nested association…”
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