Search Results - "Rex, R."

Quality MAGnified by Malmstrom, Rex R.

“…This Genome Watch highlights different tools and strategies used to enhance the quality of metagenome-assembled genomes (MAGs) generated in microbiome studies…”
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Genome-wide identification of bacterial plant colonization genes by Cole, Benjamin J, Feltcher, Meghan E, Waters, Robert J, Wetmore, Kelly M, Mucyn, Tatiana S, Ryan, Elizabeth M, Wang, Gaoyan, Ul-Hasan, Sabah, McDonald, Meredith, Yoshikuni, Yasuo, Malmstrom, Rex R, Deutschbauer, Adam M, Dangl, Jeffery L, Visel, Axel

“…Diverse soil-resident bacteria can contribute to plant growth and health, but the molecular mechanisms enabling them to effectively colonize their plant hosts…”
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Hidden diversity of soil giant viruses by Schulz, Frederik, Alteio, Lauren, Goudeau, Danielle, Ryan, Elizabeth M., Yu, Feiqiao B., Malmstrom, Rex R., Blanchard, Jeffrey, Woyke, Tanja

“…Known giant virus diversity is currently skewed towards viruses isolated from aquatic environments and cultivated in the laboratory. Here, we employ…”
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Probing the active fraction of soil microbiomes using BONCAT-FACS by Couradeau, Estelle, Sasse, Joelle, Goudeau, Danielle, Nath, Nandita, Hazen, Terry C., Bowen, Ben P., Chakraborty, Romy, Malmstrom, Rex R., Northen, Trent R.

“…The ability to link soil microbial diversity to soil processes requires technologies that differentiate active microbes from extracellular DNA and dormant…”
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Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites by Villalobos-Escobedo, José Manuel, Mercado-Esquivias, Maria Belen, Adams, Catharine, Kauffman, W. Berkeley, Malmstrom, Rex R, Deutschbauer, Adam M, Glass, N. Louise

“…Trichoderma spp. are ubiquitous rhizosphere fungi capable of producing several classes of secondary metabolites that can modify the dynamics of the…”
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Visualizing in situ translational activity for identifying and sorting slow-growing archaeal–bacterial consortia by Hatzenpichler, Roland, Connon, Stephanie A., Goudeau, Danielle, Malmstrom, Rex R., Woyke, Tanja, Orphan, Victoria J.

“…To understand the biogeochemical roles of microorganisms in the environment, it is important to determine when and under which conditions they are…”
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The human O-GlcNAcome database and meta-analysis by Wulff-Fuentes, Eugenia, Berendt, Rex R., Massman, Logan, Danner, Laura, Malard, Florian, Vora, Jeet, Kahsay, Robel, Olivier-Van Stichelen, Stephanie

“…Over the past 35 years, ~1700 articles have characterized protein O -GlcNAcylation. Found in almost all living organisms, this post-translational modification…”
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The Epigenomic Landscape of Prokaryotes by Blow, Matthew J, Clark, Tyson A, Daum, Chris G, Deutschbauer, Adam M, Fomenkov, Alexey, Fries, Roxanne, Froula, Jeff, Kang, Dongwan D, Malmstrom, Rex R, Morgan, Richard D, Posfai, Janos, Singh, Kanwar, Visel, Axel, Wetmore, Kelly, Zhao, Zhiying, Rubin, Edward M, Korlach, Jonas, Pennacchio, Len A, Roberts, Richard J

“…DNA methylation acts in concert with restriction enzymes to protect the integrity of prokaryotic genomes. Studies in a limited number of organisms suggest that…”
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Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics by Roux, Simon, Chan, Leong-Keat, Egan, Rob, Malmstrom, Rex R., McMahon, Katherine D., Sullivan, Matthew B.

“…Virophages are small viruses that co-infect eukaryotic cells alongside giant viruses ( Mimiviridae ) and hijack their machinery to replicate. While two types…”
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Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea by McCarren, Jay, Becker, Jamie W., Repeta, Daniel J., Shi, Yanmei, Young, Curtis R., Malmstrom, Rex R., Chisholm, Sallie W., DeLong, Edward F.

“…Marine dissolved organic matter (DOM) contains as much carbon as the Earth's atmosphere, and represents a critical component of the global carbon cycle. To…”
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Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus by Kashtan, Nadav, Roggensack, Sara E., Rodrigue, Sébastien, Thompson, Jessie W., Biller, Steven J., Coe, Allison, Ding, Huiming, Marttinen, Pekka, Malmstrom, Rex R., Stocker, Roman, Follows, Michael J., Stepanauskas, Ramunas, Chisholm, Sallie W.

“…Extensive genomic diversity within coexisting members of a microbial species has been revealed through selected cultured isolates and metagenomic assemblies…”
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Niche differentiation is spatially and temporally regulated in the rhizosphere by Nuccio, Erin E., Starr, Evan, Karaoz, Ulas, Brodie, Eoin L., Zhou, Jizhong, Tringe, Susannah G., Malmstrom, Rex R., Woyke, Tanja, Banfield, Jillian F., Firestone, Mary K., Pett-Ridge, Jennifer

“…The rhizosphere is a hotspot for microbial carbon transformations, and is the entry point for root polysaccharides and polymeric carbohydrates that are…”
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Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations by Bendall, Matthew L, Stevens, Sarah LR, Chan, Leong-Keat, Malfatti, Stephanie, Schwientek, Patrick, Tremblay, Julien, Schackwitz, Wendy, Martin, Joel, Pati, Amrita, Bushnell, Brian, Froula, Jeff, Kang, Dongwan, Tringe, Susannah G, Bertilsson, Stefan, Moran, Mary A, Shade, Ashley, Newton, Ryan J, McMahon, Katherine D, Malmstrom, Rex R

“…Multiple models describe the formation and evolution of distinct microbial phylogenetic groups. These evolutionary models make different predictions regarding…”
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea by Bowers, Robert M, Kyrpides, Nikos C, Stepanauskas, Ramunas, Harmon-Smith, Miranda, Doud, Devin, Reddy, T B K, Schulz, Frederik, Jarett, Jessica, Rivers, Adam R, Eloe-Fadrosh, Emiley A, Tringe, Susannah G, Ivanova, Natalia N, Copeland, Alex, Clum, Alicia, Becraft, Eric D, Malmstrom, Rex R, Birren, Bruce, Podar, Mircea, Bork, Peer, Weinstock, George M, Garrity, George M, Dodsworth, Jeremy A, Yooseph, Shibu, Sutton, Granger, Glöckner, Frank O, Gilbert, Jack A, Nelson, William C, Hallam, Steven J, Jungbluth, Sean P, Ettema, Thijs J G, Tighe, Scott, Konstantinidis, Konstantinos T, Liu, Wen-Tso, Baker, Brett J, Rattei, Thomas, Eisen, Jonathan A, Hedlund, Brian, McMahon, Katherine D, Fierer, Noah, Knight, Rob, Finn, Rob, Cochrane, Guy, Karsch-Mizrachi, Ilene, Tyson, Gene W, Rinke, Christian, Lapidus, Alla, Meyer, Folker, Yilmaz, Pelin, Parks, Donovan H, Murat Eren, A, Schriml, Lynn, Banfield, Jillian F, Hugenholtz, Philip, Woyke, Tanja

“…Standards for sequencing the microbial 'uncultivated majority', namely bacterial and archaeal single-cell genome sequences, and genome sequences from…”
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Brief Report: “Um” Fillers Distinguish Children With and Without ASD by McGregor, Karla K., Hadden, Rex R.

“…Two laboratories have reported that children with ASD are less likely than their typical peers to fill pauses with um but their use of uh is unaffected (Irvine…”
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Whole genome amplification and de novo assembly of single bacterial cells by Rodrigue, Sébastien, Malmstrom, Rex R, Berlin, Aaron M, Birren, Bruce W, Henn, Matthew R, Chisholm, Sallie W

“…Single-cell genome sequencing has the potential to allow the in-depth exploration of the vast genetic diversity found in uncultured microbes. We used the…”
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SAR11 bacteria linked to ocean anoxia and nitrogen loss by Tsementzi, Despina, Wu, Jieying, Deutsch, Samuel, Nath, Sangeeta, Rodriguez-R, Luis M., Burns, Andrew S., Ranjan, Piyush, Sarode, Neha, Malmstrom, Rex R., Padilla, Cory C., Stone, Benjamin K., Bristow, Laura A., Larsen, Morten, Glass, Jennifer B., Thamdrup, Bo, Woyke, Tanja, Konstantinidis, Konstantinos T., Stewart, Frank J.

“…Bacteria of the SAR11 clade constitute up to one half of all microbial cells in the oxygen-rich surface ocean. SAR11 bacteria are also abundant in oxygen…”
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Multicellular magnetotactic bacteria are genetically heterogeneous consortia with metabolically differentiated cells by Schaible, George A, Jay, Zackary J, Cliff, John, Schulz, Frederik, Gauvin, Colin, Goudeau, Danielle, Malmstrom, Rex R, Ruff, S Emil, Edgcomb, Virginia, Hatzenpichler, Roland

“…Consortia of multicellular magnetotactic bacteria (MMB) are currently the only known example of bacteria without a unicellular stage in their life cycle…”
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Anaesthesia workspace layout and intervertebral disc prolapse by Marks, Rex R D

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A giant planet undergoing extreme-ultraviolet irradiation by its hot massive-star host by Gaudi, B. Scott, Stassun, Keivan G., Collins, Karen A., Beatty, Thomas G., Zhou, George, Latham, David W., Bieryla, Allyson, Eastman, Jason D., Siverd, Robert J., Crepp, Justin R., Gonzales, Erica J., Stevens, Daniel J., Buchhave, Lars A., Pepper, Joshua, Johnson, Marshall C., Colon, Knicole D., Jensen, Eric L. N., Rodriguez, Joseph E., Bozza, Valerio, Novati, Sebastiano Calchi, D’Ago, Giuseppe, Dumont, Mary T., Ellis, Tyler, Gaillard, Clement, Jang-Condell, Hannah, Kasper, David H., Fukui, Akihiko, Gregorio, Joao, Ito, Ayaka, Kielkopf, John F., Manner, Mark, Matt, Kyle, Narita, Norio, Oberst, Thomas E., Reed, Phillip A., Scarpetta, Gaetano, Stephens, Denice C., Yeigh, Rex R., Zambelli, Roberto, Fulton, B. J., Howard, Andrew W., James, David J., Penny, Matthew, Bayliss, Daniel, Curtis, Ivan A., DePoy, D. L., Esquerdo, Gilbert A., Gould, Andrew, Joner, Michael D., Kuhn, Rudolf B., Labadie-Bartz, Jonathan, Lund, Michael B., Marshall, Jennifer L., McLeod, Kim K., Pogge, Richard W., Relles, Howard, Stockdale, Christopher, Tan, T. G., Trueblood, Mark, Trueblood, Patricia

“…The giant planet KELT-9b has a dayside temperature of about 4,600 K, which is sufficiently high to dissociate molecules and to evaporate its atmosphere, owing…”
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