Search Results - "Reuter, Vincent"

GEOfetch: a command-line tool for downloading data and standardized metadata from GEO and SRA by Khoroshevskyi, Oleksandr, LeRoy, Nathan, Reuter, Vincent P, Sheffield, Nathan C

“…The Gene Expression Omnibus has become an important source of biological data for secondary analysis. However, there is no simple, programmatic way to download…”
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TCR signal strength defines distinct mechanisms of T cell dysfunction and cancer evasion by Shakiba, Mojdeh, Zumbo, Paul, Espinosa-Carrasco, Gabriel, Menocal, Laura, Dündar, Friederike, Carson, Sandra E, Bruno, Emmanuel M, Sanchez-Rivera, Francisco J, Lowe, Scott W, Camara, Steven, Koche, Richard P, Reuter, Vincent P, Socci, Nicholas D, Whitlock, Benjamin, Tamzalit, Fella, Huse, Morgan, Hellmann, Matthew D, Wells, Daniel K, Defranoux, Nadine A, Betel, Doron, Philip, Mary, Schietinger, Andrea

“…T cell receptor (TCR) signal strength is a key determinant of T cell responses. We developed a cancer mouse model in which tumor-specific CD8 T cells (TST…”
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2-hydroxyglutarate inhibits MyoD-mediated differentiation by preventing H3K9 demethylation by Schvartzman, Juan-Manuel, Reuter, Vincent P., Koche, Richard P., Thompson, Craig B.

“…Oncogenic IDH1/2 mutations produce 2-hydroxyglutarate (2HG), resulting in competitive inhibition of DNA and protein demethylation. IDH-mutant cancer cells show…”
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L1CAM defines the regenerative origin of metastasis-initiating cells in colorectal cancer by Ganesh, Karuna, Basnet, Harihar, Kaygusuz, Yasemin, Laughney, Ashley M, He, Lan, Sharma, Roshan, O'Rourke, Kevin P, Reuter, Vincent P, Huang, Yun-Han, Turkekul, Mesruh, Er, Ekrem Emrah, Masilionis, Ignas, Manova-Todorova, Katia, Weiser, Martin R, Saltz, Leonard B, Garcia-Aguilar, Julio, Koche, Richard, Lowe, Scott W, Pe'er, Dana, Shia, Jinru, Massagué, Joan

“…Metastasis-initiating cells with stem-like properties drive cancer lethality, yet their origins and relationship to primary-tumor-initiating stem cells are not…”
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PEPATAC: an optimized pipeline for ATAC-seq data analysis with serial alignments by Smith, Jason P, Corces, M Ryan, Xu, Jin, Reuter, Vincent P, Chang, Howard Y, Sheffield, Nathan C

“…Abstract As chromatin accessibility data from ATAC-seq experiments continues to expand, there is continuing need for standardized analysis pipelines. Here, we…”
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Refgenie: a reference genome resource manager by Stolarczyk, Michał, Reuter, Vincent P, Smith, Jason P, Magee, Neal E, Sheffield, Nathan C

“…Abstract Background Reference genome assemblies are essential for high-throughput sequencing analysis projects. Typically, genome assemblies are stored on disk…”
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Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects by Sheffield, Nathan C, Stolarczyk, Michał, Reuter, Vincent P, Rendeiro, André F

“…Abstract Background Organizing and annotating biological sample data is critical in data-intensive bioinformatics. Unfortunately, metadata formats from a data…”
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Author Correction: L1CAM defines the regenerative origin of metastasis-initiating cells in colorectal cancer by Ganesh, Karuna, Basnet, Harihar, Kaygusuz, Yasemin, Laughney, Ashley M, He, Lan, Sharma, Roshan, O'Rourke, Kevin P, Reuter, Vincent P, Huang, Yun-Han, Turkekul, Mesruh, Er, Ekrem Emrah, Masilionis, Ignas, Manova-Todorova, Katia, Weiser, Martin R, Saltz, Leonard B, Garcia-Aguilar, Julio, Koche, Richard, Lowe, Scott W, Pe'er, Dana, Shia, Jinru, Massagué, Joan

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SWI/SNF Complex Mutations Promote Thyroid Tumor Progression and Insensitivity to Redifferentiation Therapies by Saqcena, Mahesh, Leandro-Garcia, Luis Javier, Maag, Jesper L V, Tchekmedyian, Vatche, Krishnamoorthy, Gnana P, Tamarapu, Prasanna P, Tiedje, Vera, Reuter, Vincent, Knauf, Jeffrey A, de Stanchina, Elisa, Xu, Bin, Liao, Xiao-Hui, Refetoff, Samuel, Ghossein, Ronald, Chi, Ping, Ho, Alan L, Koche, Richard P, Fagin, James A

“…Mutations of subunits of the SWI/SNF chromatin remodeling complexes occur commonly in cancers of different lineages, including advanced thyroid cancers. Here…”
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Abstract A12: L1CAM defines the regenerative origin of metastasis initiating cells in colorectal cancer by Ganesh, Karuna, Basnet, Harihar, Kaygusuz, Yasemin, Laughney, Ashley, He, Lan, Sharma, Roshan, O'Rourke, Kevin, Reuter, Vincent, Huang, Yun-Han, Masilionis, Ignas, Turkekul, Mesruh, Er, Ekrem, Manova-Todorova, Katja, Saltz, Leonard, Weiser, Martin, Garcia-Aguilar, Julio, Koche, Richard, Lowe, Scott, Peer, Dana, Shia, Jinru, Massague, Joan

“…Abstract Metastatic cancers relapse due to the emergence of stemlike clones capable of reversible quiescence, tumour reinitiation, and therapy resistance…”
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The chromatin accessibility landscape of primary human cancers by Corces, M Ryan, Granja, Jeffrey M, Shams, Shadi, Louie, Bryan H, Seoane, Jose A, Zhou, Wanding, Silva, Tiago C, Groeneveld, Clarice, Wong, Christopher K, Cho, Seung Woo, Satpathy, Ansuman T, Mumbach, Maxwell R, Hoadley, Katherine A, Robertson, A Gordon, Sheffield, Nathan C, Felau, Ina, Castro, Mauro A A, Berman, Benjamin P, Staudt, Louis M, Zenklusen, Jean C, Laird, Peter W, Curtis, Christina, Greenleaf, William J, Chang, Howard Y

“…We present the genome-wide chromatin accessibility profiles of 410 tumor samples spanning 23 cancer types from The Cancer Genome Atlas (TCGA). We identify…”
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Using Graphic Management Tools by Reuter, Vincent G.

“…This publication contains reprint articles for which IEEE does not hold copyright. Full text is not available on IEEE Xplore for these articles…”
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Staffing and Training for Work Study by Reuter, Vincent G

“…Work Study may be defined as a combination of (1) methods study, which is a prerequisite to (2) work measurement. Most organizations include an industrial…”
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Mechanized Physical Distribution with the Unit Load by Reuter, Vincent George

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Work Study as a Tool for Increased Productivity and Profits by Reuter, Vincent G

“…The field of work study is being used increasingly by companies to improve productivity. Work study is made up of 2 valuable techniques: 1. work design, which…”
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Wage Incentives: A Valued Management Tool by Reuter, Vincent G

“…Currently, the continued viability of wage incentives as motivators is being questioned. While some suggest that wage incentives fail to motivate blue collar…”
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Measuring work by Reuter, V G

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