Search Results - "Repar, Jelena"

Characterization of gross genome rearrangements in Deinococcus radiodurans recA mutants by Repar, Jelena, Zahradka, Davor, Sović, Ivan, Zahradka, Ksenija

“…Genome stability in radioresistant bacterium Deinococcus radiodurans depends on RecA, the main bacterial recombinase. Without RecA, gross genome rearrangements…”
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A Topic Coverage Approach to Evaluation of Topic Models by Korencic, Damir, Ristov, Strahil, Repar, Jelena, Snajder, Jan

“…Topic models are widely used unsupervised models capable of learning topics - weighted lists of words and documents - from large collections of text documents…”
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Application of Long-Chained Auxin Conjugates Influenced Auxin Metabolism and Transcriptome Response in Brassica rapa L. ssp. pekinensis by Smolko, Ana, Repar, Jelena, Matković, Marija, Pavlović, Iva, Pěnčík, Aleš, Novák, Ondřej, Ludwig-Müller, Jutta, Salopek-Sondi, Branka

“…Auxin amino acid conjugates are considered to be storage forms of auxins. Previous research has shown that indole-3-acetyl-L-alanine (IAA-Ala),…”
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Genetic Diversity of Cryphonectria hypovirus 1, a Biocontrol Agent of Chestnut Blight, in Croatia and Slovenia by Krstin, Ljiljana, Katanić, Zorana, Repar, Jelena, Ježić, Marin, Kobaš, Ana, Ćurković-Perica, Mirna

“…Transmissible hypovirulence associated with Cryphonectria hypovirus 1 (CHV1) has been used for biological control of chestnut blight, devastating disease of…”
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Chromosome Segregation and Cell Division Defects in Escherichia coli Recombination Mutants Exposed to Different DNA-Damaging Treatments by Zahradka, Ksenija, Repar, Jelena, Đermić, Damir, Zahradka, Davor

“…Homologous recombination repairs potentially lethal DNA lesions such as double-strand DNA breaks (DSBs) and single-strand DNA gaps (SSGs). In , DSB repair is…”
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Translational selection is ubiquitous in prokaryotes by Supek, Fran, Skunca, Nives, Repar, Jelena, Vlahovicek, Kristian, Smuc, Tomislav

“…Codon usage bias in prokaryotic genomes is largely a consequence of background substitution patterns in DNA, but highly expressed genes may show a preference…”
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RecA protein assures fidelity of DNA repair and genome stability in Deinococcus radiodurans by Repar, Jelena, Cvjetan, Svjetlana, Slade, Dea, Radman, Miroslav, Zahradka, Davor, Zahradka, Ksenija

“…Deinococcus radiodurans is one of the most radiation-resistant organisms known. It can repair hundreds of radiation-induced double-strand DNA breaks without…”
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Accuracy of Genome Reassembly in γ-Irradiated Escherichia coli by Jelena Repar, Davor Zahradka, Ksenija Zahradka

“…γ-Radiation, a powerful DNA-damaging agent, can often lead to the formation of genome rearrangements. In this study, we have assessed the capacity of…”
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Mobile Introns Shape the Genetic Diversity of Their Host Genes by Repar, Jelena, Warnecke, Tobias

“…Self-splicing introns populate several highly conserved protein-coding genes in fungal and plant mitochondria. In fungi, many of these introns have retained…”
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Non-Random Inversion Landscapes in Prokaryotic Genomes Are Shaped by Heterogeneous Selection Pressures by Repar, Jelena, Warnecke, Tobias

“…Inversions are a major contributor to structural genome evolution in prokaryotes. Here, using a novel alignment-based method, we systematically compare 1,651…”
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Structural Differences between the Genomes of Deinococcus radiodurans Strains from Different Laboratories by Zahradka, Ksenija, Zahradka, Davor, Repar, Jelena

“…The bacterium is known to efficiently and accurately reassemble its genome after hundreds of DNA double-strand breaks (DSBs). Only at very large amounts of…”
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Longitudinal study on the effect of autogenous vaccine application on the sequence type and virulence profiles of Escherichia coli in broiler breeder flocks by Lozica, Liča, Repar, Jelena, Gottstein, Željko

“…•50 % of the most prevalent virulence genes (>85 %) were toxins/bacteriocin-related.•The most prevalent STs were ST95, ST117, ST390 and ST23.•Application of…”
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Application of Long-Chained Auxin Conjugates Influenced Auxin Metabolism and Transcriptome Response in IBrassica rapa/I L. ssp. Ipekinensis/I by Smolko, Ana, Repar, Jelena, Matković, Marija, Pavlović, Iva, Pěnčík, Aleš, Novák, Ondřej, Ludwig-Müller, Jutta, Salopek-Sondi, Branka

“…Auxin amino acid conjugates are considered to be storage forms of auxins. Previous research has shown that indole-3-acetyl-L-alanine (IAA-Ala),…”
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Genetic analysis of transductional recombination in Escherichia coli reveals differences in the postsynaptic stages of RecBCD and RecFOR pathways: Postsynaptic stages of transductional recombination in E. coli by Zahradka, Ksenija, Repar, Jelena, Đermić, Damir, Zahradka, Davor

“…Background and purpose: Homologous recombination in Escherichia coli proceeds via two pathways, RecBCD and RecFOR, which use different enzymes for DNA end…”
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Genetic analysis of transductional recombination in Escherichia coli reveals differences in the postsynaptic stages of RecBCD and RecFOR pathways by Zahradka, Ksenija, Repar, Jelena, Đermić, Damir, Zahradka, Davor

“…Background and purpose: Homologous recombination in Escherichia coli proceeds via two pathways, RecBCD and RecFOR, which use different enzymes for DNA end…”
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Chromosome Segregation and Cell Division Defects in IEscherichia coli/I Recombination Mutants Exposed to Different DNA-Damaging Treatments by Zahradka, Ksenija, Repar, Jelena, Đermić, Damir, Zahradka, Davor

“…Homologous recombination repairs potentially lethal DNA lesions such as double-strand DNA breaks (DSBs) and single-strand DNA gaps (SSGs). In Escherichia coli,…”
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Elevated Rate of Genome Rearrangements in Radiation-Resistant Bacteria by Repar, Jelena, Supek, Fran, Klanjscek, Tin, Warnecke, Tobias, Zahradka, Ksenija, Zahradka, Davor

“…A number of bacterial, archaeal, and eukaryotic species are known for their resistance to ionizing radiation. One of the challenges these species face is a…”
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RecBCD- RecFOR-independent pathway of homologous recombination in Escherichia coli by Buljubašić, Maja, Hlevnjak, Ana, Repar, Jelena, Đermić, Damir, Filić, Vedrana, Weber, Igor, Zahradka, Ksenija, Zahradka, Davor

“…•A novel RecBCD- RecFOR-independent recombination pathway is identified in E. coli.•RecBCD- RecFOR-independent (RecBFI) pathway is active in sbcB15 sbcC(D)…”
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Exonuclease VII is involved in “reckless” DNA degradation in UV-irradiated Escherichia coli by Repar, Jelena, Briški, Nina, Buljubašić, Maja, Zahradka, Ksenija, Zahradka, Davor

“…► Inactivation of ExoVII attenuates “reckless” DNA degradation in UV-irradiated Escherichia coli. ► ExoVII, ExoI and SbcCD play partially redundant roles in…”
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RecF recombination pathway in Escherichia coli cells lacking RecQ, UvrD and HelD helicases by Buljubašić, Maja, Repar, Jelena, Zahradka, Ksenija, Đermić, Damir, Zahradka, Davor

“…► RecQ and UvrD helicases are partially redundant in recBCD sbcB15 sbcC mutants. ► HelD helicase is dispensable for recombination in recBCD sbcB sbcC mutants…”
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